Publications of Bernd Timmermann

Chua, R. L.; Lukassen, S.; Trump, S.; Hennig, B. P.; Wendisch, D.; Pott, F.; Debnath, O.; Thürmann, L.; Kurth, F.; Völker, M. T. et al.; Kazmierski, J.; Timmermann, B.; Twardziok, S.; Schneider, S.; Machleidt, F.; Müller-Redetzky, H.; Maier, M.; Krannich, A.; Schmidt, S.; Balzer, F.; Liebig, J.; Loske, J.; Suttorp, N.; Eils, J.; Ishaque, N.; Liebert, U. G.; von Kalle, C.; Hocke, A.; Witzenrath, M.; Goffinet, C.; Drosten, C.; Laudi, S.; Lehmann, I.; Conrad, C.; Sander, L.-E.; Eils, R.: COVID-19 severity correlates with airway epithelium-immune cell interactions identified by single-cell analysis. Nature Biotechnology 38 (8), pp. 970 - 979 (2020)

Pacini, G.; Dunkel, I.; Mages, N.; Mutzel, V.; Timmermann, B.; Marsico, A.; Schulz, E. G.: Integrated analysis of Xist upregulation and gene silencing at the onset of random X-chromosome inactivation at high temporal and allelic resolution. bioRxiv (The Preprintserver for biology) 2020 (2020)

Xiao, Y.; Clima, R.; Busch, J.; Rabien, A.; Kilic, E.; Villegas, S. L.; Timmermann, B.; Attimonelli, M.; Jung, K.; Meierhofer, D.: Decreased mitochondrial DNA content drives OXPHOS dysregulation in chromophobe renal cell carcinoma. Cancer research: an official organ of the American Association for Cancer Research, CAN-20-0754 (2020)

Herdt, O.; Reich, S.; Medenbach, J.; Timmermann, B.; Olofsson, D.; Preußner, M.; Heyd, F.: The zinc finger domains in U2AF26 and U2AF35 have diverse functionalities including a role in controlling translation. RNA Biology 17 (6), pp. 843 - 856 (2020)

Haltenhof, T.; Kotte, A.; De Bortoli, F.; Schiefer, S.; Meinke, S.; Emmerichs, A.-K.; Petermann, K. K.; Timmermann, B.; Imhof, P.; Franz, A. et al.; Loll, B.; Wahl, M. C.; Preußner, M.; Heyd , F.: A Conserved Kinase-Based Body-Temperature Sensor Globally Controls Alternative Splicing and Gene Expression. Molecular Cell 78 (1), pp. 57 - 69 (2020)

Bratovič, M.; Fonfara, I.; Chylinski, K.; Gálvez, E. J. C.; Sullivan, T. J.; Boerno, S.; Timmermann, B.; Boettcher, M.; Charpentier, E.: Bridge helix arginines play a critical role in Cas9 sensitivity to mismatches. Nature Chemical Biology 16, pp. 587 - 595 (2020)

Kupke, S. Y.; Ly, L.-H.; Börno, S. T.; Ruff, A.; Timmermann, B.; Vingron, M.; Haas, S.: Single-Cell Analysis Uncovers a Vast Diversity in Intracellular Viral Defective Interfering RNA Content Affecting the Large Cell-to-Cell Heterogeneity in Influenza A Virus Replication. Viruses 12 (1), pii: E71 (2020)

Alahmad, A.; Paffrath, V.; Clima, R.; Busch, J. F.; Rabien, A.; Kilic, E.; Villegas, S.; Timmermann, B.; Attimonelli, M.; Jung, K. et al.; Meierhofer, D.: Papillary Renal Cell Carcinomas Rewire Glutathione Metabolism and Are Deficient in Both Anabolic Glucose Synthesis and Oxidative Phosphorylation. Cancers 11 (9), 1298 (2019)

Segal, J.; Mülleder, M.; Krüger, A.; Adler, T.; Scholze-Wittler, M.; Becker, L.; Calzada-Wack, J.; Garrett, L.; Hölter, S. M.; Rathkolb, B. et al.; Rozman, J.; Racz, I.; Fischer, R.; Busch, D. H.; Neff, F.; Klingenspor, M.; Klopstock, T.; Grüning, N.-M.; Michel, S.; Lukaszewska-McGreal, B.; Voigt, I.; Hartmann, L.; Timmermann, B.; Lehrach, H.; Wolf, E.; Wurst, W.; Gailus-Durner, V.; Fuchs, H.; de Angelis, M. H.; Schrewe, H.; Yuneva, M.; Ralser, M.: Low catalytic activity is insufficient to induce disease pathology in triosephosphate isomerase (TPI) deficiency. Journal of Inherited Metabolic Disease 22 (5), pp. 839 - 849 (2019)

Bose, D.; Neumann, A.; Timmermann, B.; Meinke, S.; Heyd, F.: Differential Interleukin-2 Transcription Kinetics Render Mouse but Not Human T Cells Vulnerable to Splicing Inhibition Early after Activation. Molecular and Cellular Biology (Washington, DC) 39 (16), e00035-19 (2019)

Despang, A.; Schöpflin, R.; Franke, M.; Ali, S.; Jerković, I.; Paliou, C.; Chan, W.-L.; Timmermann, B.; Wittler, L.; Vingron, M. et al.; Mundlos, S.; Ibrahim, D. M.: Functional dissection of the Sox9-Kcnj2 locus identifies nonessential and instructive roles of TAD architecture. Nature Genetics 51 (8), pp. 1263 - 1271 (2019)

Fattahi, Z.; Beheshtian, M.; Mohseni, M.; Poustchi, H.; Sellars, E.; Nezhadi, S. H.; Amini, A.; Arzhangi, S.; Jalalvand, K.; Jamali, P. et al.; Mohammadi, Z.; Davarnia, B.; Nikuei, P.; Oladnabi, M.; Mohammadzadeh, A.; Zohrehvand, E.; Nejatizadeh, A.; Shekari, M.; Bagherzadeh, M.; Shamsi‐Gooshki, E.; Börno, S.; Timmermann, B.; Haghdoost, A.; Najafipour, R.; Khorram Khorshid, H. R.; Kahrizi, K.; Malekzadeh, R.; Akbari, M. R.; Najmabadi, H.: Iranome: A catalogue of genomic variations in the Iranian population. Human Mutation 2019, pp. 1 - 17 (2019)

Hu, H.; Kahrizi, K.; Musante, L.; Fattahi, Z.; Herwig, R.; Hosseini, M.; Oppitz, C.; Abedini, S. S.; Suckow, V.; Farzaneh, L. et al.; Beheshtian, M.; Lipkowitz, B.; Akhtarkhavari, T.; Mehvari, S.; Otto, S.; Mohseni, M.; Arzhangi, S.; Jamali, P.; Mojahedi, F.; Taghdiri, M.; Papari, E.; Soltani Banavandi, M. J.; Akbari, S.; Tonekaboni, S. H.; Dehghani, H.; Ebrahimpou, M. R.; Bader, I.; Davarnia, B.; Cohen, M.; Khodaei, H.; Albrecht, B.; Azimi, S.; Zirn, B.; Bastami, M.; Wieczorek, D.; Bahrami, G.; Keleman, K.; Vahid, L. N.; Timmermann, B.; Pourfatemi, F.; Jankhah, A.; Chen, W.; Nikuei, P.; Kalscheuer, V. M.; Oladnabi, M.; Wienker, T. F.; Ropers, H.-H.; Najmabadi, H.: Genetics of intellectual disability in consanguineous families. Molecular Psychiatry 24 (7), pp. 1027 - 1039 (2019)

Paliou, C.; Guckelberger, P.; Schöpflin, R.; Heinrich, V.; Esposito, A.; Chiariello, A. M.; Bianco, S.; Annunziatella, C.; Helmuth, J.; Haas, S. et al.; Jerković, I.; Brieske, N.; Wittler, L.; Timmermann, B.; Nicodemi, M.; Vingron, M.; Mundlos, S.; Andrey, G.: Preformed Chromatin Topology Assists Transcriptional Robustness of Shh during Limb Development. bioRxiv (Preprint Server) 2019, 528877 (2019)

Philippe, H.; Poustka, A. J.; Chiodin, M.; Hoff, K. J.; Dessimoz, C.; Tomiczek, B.; Schiffer, P. H.; Müller, S.; Domman, D.; Horn, M. et al.; Kuhl, H.; Timmermann, B.; Satoh, N.; Hikosaka-Katayama, T.; Nakano, H.; Rowe, M. L.; Elphick, M. R.; Thomas-Chollier, M.; Hankeln, T.; Mertes, F.; Wallberg, A.; Rast, J. P.; Copley, R. R.; Martinez, P.; Telford, M. J.: Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria. Current Biology 29 (11), e6, pp. 1818 - 1826 (2019)

Gossmann, T. I.; Shanmugasundram, A.; Börno, S.; Duvaux, L.; Lemaire, C.; Kuhl, H.; Klages, S.; Roberts, L. D.; Schade, S.; Gostner, J. M. et al.; Hildebrand, F.; Vowinckel, J.; Bichet, C.; Mülleder, M.; Calvani, E.; Zelezniak, A.; Griffin, J. L.; Bork, P.; Allaine, D.; Cohas, A.; Welch, J. J.; Timmermann, B.; Ralser, M.: Ice-age climate adaptations trap the Alpine marmot in a ,state of low genetic diversity. Current Biology 29 (10), pp. 1712 - 1720 (2019)

De Bortoli, F.; Neumann, A.; Kotte, A.; Timmermann, B.; Schüler, T.; Wahl, M. C.; Loll, B.; Heyd, F.: Increased versatility despite reduced molecular complexity – evolution, structure and function of metazoan splicing factor PRPF39. Nucleic Acids Research (London), gkz243 (2019)

Verheijen, M.; Lienhard, M.; Schrooders, Y.; Clayton, O.; Nudischer, R.; Boerno, S. T.; Timmermann, B.; Selevsek, N.; Schlapbach, R.; Gmuender, H. et al.; Gotta, S.; Geraedts, J.; Herwig, R.; Kleinjans, J.; Caiment, F.: DMSO induces drastic changes in human cellular processes and epigenetic landscape in vitro. Scientific Reports 9 (9), 4641 (2019)

Lowy-Gallego, E.; Fairley, S.; Zheng-Bradley, X.; Ruffier, M.; Clarke, L.; Flicek, P.; 1000 Genomes Project , C.; Timmermann, B.: Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project. Wellcome Open Research (open access publishing platform) 2019, 4:50 (2019)

Kraft, K.; Magg, A.; Heinrich, V.; Riemenschneider, C.; Schöpflin, R.; Markowski, J.; Ibrahim, D.; Acuna-Hidalgo, R.; Despang, A.; Andrey, G. et al.; Wittler, L.; Timmermann, B.; Vingron, M.; Mundlos, S.: Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations. Nature Cell Biology 21 (3), pp. 305 - 310 (2019)