Journal Article (1125)

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Campana , P. A.; Prasse , P.; Lienhard, M.; Thedinga, K.; Herwig, R.; Scheffer , T.: Cancer drug sensitivity estimation using modular deep Graph Neural Networks. NAR: genomics and bioinformatics 6 (2), lqae043 (2024)
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Rosebrock, D.; Vingron, M.; Arndt, P. F.: Modeling gene expression cascades during cell state transitions. iScience 27 (4), 109386 (2024)
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Springer, C.; Binsch, C.; Weide, D.; Toska, L.; Cremer, A. L.; Backes, H.; Scheel, A. K.; Espelage, L.; Kotzka, J.; Sill, S. et al.; Kurowski, A.; Daebin, K.; Karpinski, S.; Schnurr, T. M.; Hansen, T.; Hartwig, S.; Lehr, S.; Cames, S.; Brüning, J.; Lienhard, M.; Herwig, R.; Börno, S.; Timmermann, B.; Al-Hasani, H.; Chadt, A.: Depletion of TBC1D4 improves the metabolic exercise response by overcoming genetically induced peripheral insulin resistance. Diabetes, db230463 (2024)
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Ibrahim, D. M.: Enhancer contacts during embryonic development show diverse interaction modes and modest yet significant increases upon gene activation. Nature Genetics (2024)
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Sheinman, M.; Arndt, P. F.; Massip, F.: Modeling the mosaic structure of bacterial genomes to infer their evolutionary history. PNAS 121 (13), e2313367121 (2024)
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Andrique, C.; Bonnet, A. L.; Dang, J.; Lesieur, J.; Krautzberger, A. M.; Baroukh, B.; Torrens, C.; Sadoine, J.; Schmitt, A.; Rochefort, G. Y. et al.; Bardet, C.; Six, I.; Houillier, P.; Tharaux, P. L.; Schrewe, H.; Gaucher, C.; Chaussain, C.: Vasorin as an actor of bone turnover? Journal of Cellular Physiology (2024)
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Raaz, L.; Mendez, P.-L.; Mundlos, S.; Knaus, P.; Jatzlau, J.: Protocol for chromatin accessibility profiling of human endothelial cells cultured under fluid shear stress using ATAC-seq. STAR Protocols 5 (1), 102859 (2024)
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Hauswedell , H.; Hetzel, S.; Gottlieb , S. G.; Kretzmer, H.; Meissner, A.; Reinert, K.: Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences. Bioinformatics 40 (3), btae097 (2024)
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Kanczok, J.; Jauch-Chara, K.; Müller, F.-J.: Imagery rescripting and cognitive restructuring for inpatients with moderate and severe depression - a controlled pilot study. BMC Psychiatry 24 (1), 194 (2024)
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Rüegg, A. B.; van der Weijden, V. A.; de Sousa, J. A.; von Meyenn, F.; Pausch, H.; Ulbrich, S. E.: Developmental progression continues during embryonic diapause in the roe deer. Communications Biology 7 (1), 270 (2024)
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Nakanoh, S.; Sham, K.; Ghimire, S.; Mohorianu, I.; Rayon, T.; Vallier, L.: Human surface ectoderm and amniotic ectoderm are sequentially specified according to cellular density. Science Advances 10 (9), eadh7748 (2024)
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Ilik, I. A.; Glažar, P.; Tse, K.; Brändl, B.; Meierhofer, D.; Müller, F.-J.; Smith, Z. D.; Aktas, T.: Autonomous transposons tune their sequences to ensure somatic suppression. Nature 626 (8001), pp. 1116 - 1124 (2024)
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Kudrin, P.; Singh, A.; Meierhofer, D.; Kuśnierczyk, A.; Ørom, U. A. V.: N4-acetylcytidine (ac4C) promotes mRNA localization to stress granules. EMBO Reports (2024)
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Flügel, T.; Schacherl, M.; Unbehaun, A.; Schroeer, B.; Dabrowski, M.; Bürger, J.; Mielke, T.; Sprink, T.; Diebolder, C. A.; Guillén Schlippe , Y. V. et al.; Spahn , C. M. T.: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nature Communications 15 (1), 1756 (2024)
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Key, J.; Gispert, S.; Reddy Kandi , A.; Heinz, D.; Hamann, A.; Osiewacz, H. D.; Meierhofer, D.; Auburger, G.: CLPP-Null Eukaryotes with Excess Heme Biosynthesis Show Reduced L-arginine Levels, Probably via CLPX-Mediated OAT Activation. Biomolecules 14 (2), 241 (2024)
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Wei , X.; Rigopoulos, A.; Lienhard, M.; Pöhle-Kronawitter, S.; Kotsaris , G.; Franke, J.; Berndt, N.; Mejedo, J. O.; Wu, H.; Börno, S. et al.; Timmermann, B.; Murgai, A.; Glauben, R.; Stricker, S.: Neurofibromin 1 controls metabolic balance and Notch-dependent quiescence of murine juvenile myogenic progenitors. Nature Communications 15 (1), 1393 (2024)
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Grüning, N.-M.; Ralser, M.: Monogenic Disorders of ROS Production and the Primary Anti-Oxidative Defense. Biomolecules 14 (2), 206 (2024)
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Yan, M.; Li, M.; Wang, Y.; Wang, X.; Moeinzadeh, H.-M.; Quispe-Huamanquispe, D. G.; Fan, W.; Fang, Y.; Wang, Y.; Nie, H. et al.; Wang, Z.; Tanaka, A.; Heider, B.; Kreuze, J. F.; Gheysen, G.; Wang, H.; Vingron, M.; Bock, R.; Yang, J.: Haplotype-based phylogenetic analysis and population genomics uncover the origin and domestication of sweetpotato. Molecular Plant 17, pp. 1 - 20 (2024)
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Mottola, A.; Hartl, J.; Ralser, M.; Berman, J.: Metabolic sensing tips the balance of drug tolerance in fungal meningitis. Nature Microbiology 9 (2), pp. 316 - 317 (2024)
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Schulz, E. G.: BREACHing new grounds in fragile X syndrome: Trinucleotide expansion linked to genome-wide heterochromatin domains and genome misfolding. Molecular Cell 84 (3), pp. 413 - 414 (2024)
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