Publikationen von Martin Vingron
Alle Typen
Zeitschriftenartikel (217)
1.
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27 (4), 109386 (2024)
Modeling gene expression cascades during cell state transitions. iScience 2.
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17, S. 1 - 20 (2024)
Haplotype-based phylogenetic analysis and population genomics uncover the origin and domestication of sweetpotato. Molecular Plant 3.
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FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy. Nature Cell Biology (2024)
4.
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39 (11), btad687 (2023)
CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction. Bioinformatics 5.
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26 (9), 107405 (2023)
Fluid shear stress-modulated chromatin accessibility reveals the mechano-dependency of endothelial SMAD1/5-mediated gene transcription. iScience 6.
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72 (4), S. 1023 - 1040 (2023)
Association Plots: visualizing cluster-specific associations in high-dimensional correspondence analysis biplots. Journal of the Royal Statistical Society - Series C: Applied Statistics 7.
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39 (6), btad364 (2023)
IsoTools: a flexible workflow for long-read transcriptome sequencing analysis. Bioinformatics 8.
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24 (1), 131 (2023)
Hierarchical Interleaved Bloom Filter: enabling ultrafast, approximate sequence queries. Genome Biology: Biology for the Post-Genomic Era 9.
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91 (7), S. 980 - 990 (2023)
Prediction of protein–protein interactions using sequences ofintrinsically disordered regions. Proteins: Structure, Function, and Bioinformatics 10.
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150 (17), dev201562 (2023)
Induction of kidney-related gene programs through co-option of SALL1 in mole ovotestes. Development 11.
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13, 6470 (2022)
Integration of Hi-C with short and long-read genome sequencing reveals the structure of germline rearranged genomes. Nature Communications 12.
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Co-option of the transcription factor SALL1 in mole ovotestis formation. bioRxiv, 514220 (2022)
13.
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185 (20), S. 3689 - 3704 (2022)
Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes. Cell 14.
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54 (7), S. 1037 - 1050 (2022)
Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature Genetics 15.
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24, S. 981 - 995 (2022)
Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature Cell Biology 16.
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434 (11), 167525 (2022)
Visualizing Cluster-specific Genes from Single-cell Transcriptomics Data Using Association Plots. Journal of Molecular Biology 17.
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23, 67 (2022)
TADA – a Machine Learning Tool for Functional Annotation based Prioritisation of Putative Pathogenic CNVs. Genome Biology 18.
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3, 100414 (2022)
Effect of imputation on gene network reconstruction from single-cell RNA-seq data. Patterns 19.
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49 (21), gkab1100, S. 12178 - 12195 (2021)
Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Nucleic Acids Research (London) 20.
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40, e105862 (2021)
RIF1 and KAP1 differentially regulate the choice of inactive versus active X chromosomes. The EMBO Journal