Glaser, S.; Kretzmer, H.; Kolassa, I. T.; Schlesner, M.; Fischer, A.; Fenske, I.; Siebert, R.; Ammerpohl , O.: Navigating Illumina DNA methylation data: biology versus technical artefacts. NAR: genomics and bioinformatics 6 (4), Article lqae181 (2024)

Hasenbein, T. P.; Hoelzl, S.; Smith , Z. D.; Gerhardinger, C.; Gonner, M. O. C.; Aguilar-Pimentel, A.; Amarie, O. V.; Becker, L.; Calzada-Wack, J.; Dragano, N. R. V. et al.; da Silva-Buttkus, P.; Garrett, L.; Hölter, S. M.; Kraiger, M.; Östereicher, M. A.; Rathkolb, B.; Sanz-Moreno, A.; Spielmann, N.; Wurst, W.; Gailus-Durner, V.; Fuchs, H.; Hrabě de Angelis, M.; Meissner, A.; Engelhardt, S.; Rinn, J. L.; Andergassen, D.: X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes. Nature Communications 15 (1), Article 10631 (2024)

Szalay , M.-F.; Majchrzycka, B.; Jerković, I.; Cavalli, G.; Ibrahim, D. M.: Evolution and function of chromatin domains across the tree of life. Nature Structural & Molecular Biology 31 (12), S. 1824 - 1837 (2024)

Longo , G. M. C.; Sayols, S.; Stefanova, M. E.; Xie, T.; Elsayed, W.; Panagi , A.; Stavridou, A. I.; Petrosino, G.; Ing-Simmons, E.; Melo, U. S. et al.; Gothe, H. J.; Vaquerizas, J. M.; Kotini , A. G.; Papantonis, A.; Mundlos, S.; Roukos , V.: Type II topoisomerases shape multi-scale 3D chromatin folding in regions of positive supercoils. Molecular Cell 84 (22), S. 4267 - 4281 (2024)

Pacholewska, A.; Lienhard, M.; Brueggemann, M.; Haenel, H.; Bilalli, L.; Koenigs, A.; Hess, F.; Becker, K.; Koehrer, K.; Kaiser, J. F. et al.; Gohlke, H.; Gattermann, N.; Hallek, M.; Herling, C. D.; Koenig, J.; Grimm, C.; Herwig, R.; Zarnack, K.; Schweiger, M. R.: Long-read transcriptome sequencing of CLL and MDS patients uncovers molecular effects of SF3B1 mutations. Genome Research 34 (11), S. 1832 - 1848 (2024)

Bortolini Silveira, A.; Houy, A.; Ganier, O.; Özemek, B.; Vanhuele, S.; Vincent-Salomon, A.; Cassoux, N.; Mariani , P.; Pierron, G.; Leyvraz, S. et al.; Rieke, D.; Picca, A.; Bielle, F.; Yaspo, M.-L.; Rodrigues, M.; Stern, M.-H.: Base-excision repair pathway shapes 5-methylcytosine deamination signatures in pan-cancer genomes. Nature Communications 15 (1), Article 9864 (2024)

Iyer, D. P.; Khoei , H. H.; van der Weijden, V. A.; Kagawa, H.; Pradhan, S. J.; Novatchkova, M.; McCarthy, A.; Rayon, T.; Simon, C. S.; Dunkel, I. et al.; Wamaitha, S. E.; Elder, K.; Snell , P.; Christie, L.; Schulz, E. G.; Niakan, K. K.; Rivron, N.; Bulut-Karslioglu, A.: mTOR activity paces human blastocyst stage developmental progression. Cell 187 (23), S. 6566 - 6583 (2024)

Evers , M.; Brändl, B.; Rohrandt, C.; Kubelt-Kwamin, C.; Müller, F.-J.; Danso, D.; Maicher , A.; Wang, G.; Friedrichsen , S.; Kolkenbrock, S.: Rapid intraoperative amplicon sequencing of CNS tumor markers. Computational and Structural Biotechnology Journal 26, S. 51 - 57 (2024)

Khaveh, N.; Buschow, R.; Metzger, J.: Deciphering transcriptome patterns in porcine mesenchymal stem cells promoting phenotypic maintenance and differentiation by key driver genes. Frontiers in Cell and Developmental Biology 12, Article 1478757 (2024)

Bebelman, M. P.; Belicova, L.; Gralinska, E.; Jumel , T.; Lahree, A.; Sommer, S.; Shevchenko, A.; Zatsepin, T.; Kalaidzidis, Y.; Vingron, M. et al.; Zerial, M.: Hepatocyte differentiation requires anisotropic expansion of bile canaliculi. Development 151 (22), Article dev202777 (2024)

Künzel, S. E.; Frentzel, D. P.; Flesch, L. T. M.; Knecht, V. A.; Rübsam, A.; Dreher, F.; Schütte, M.; Dubrac, A.; Lange, B.; Yaspo, M.-L. et al.; Lehrach, H.; Joussen, A. M.; Zeitz, O.: AI-driven discovery of blood xenobiotic biomarkers in neovascular age-related macular degeneration using iterative random forests. Graefe's Archive for Clinical and Experimental Ophthalmology 262 (11), S. 3567 - 3575 (2024)

Guo , J.; Krehl, K.; Safraou, Y.; Wallach, I.; Braun, J.; Meierhofer, D.; Sack, I.; Berndt , N.: Pregnancy alters fatty acid metabolism, glucose regulation, and detoxification of the liver in synchrony with biomechanical property change. Heliyon 10 (20), Article e39674. (2024)

Tsaytler, P.; Blaess, G.; Scholze-Wittler, M.; Meierhofer, D.; Wittler, L.; Koch, F.; Herrmann, B. G.: SRF promotes long-range chromatin loop formation and stem cell pluripotency. Cell Reports 43 (10), 114846 (2024)

Maroofian, R.; Pagnamenta, A. T.; Navabazam, A.; Schwessinger, R.; Roberts, H. E.; Lopopolo, M.; Dehghani, M.; Mehrjardi, M. Y. V.; Haerian, A.; Soltanianzadeh, M. et al.; Kooshki, M. H. N.; Knight, S. J. L.; Miller, K. A.; McGowan, S. J.; Chatron, N.; Timberlake, A. T.; Melo, U. S.; Mundlos, S.; Buck, D.; Twigg, S. R. F.; Taylor , J. C.; Wilkie, A. O. M.; Calpena, E.: Familial severe skeletal Class II malocclusion with gingival hyperplasia caused by a complex structural rearrangement at the KCNJ2-KCNJ16 locus. HGG Advances: Human Genetics and Genomics Advances 5 (4), Article 100352 (2024)

Altay, A.; Vingron, M.: scATAcat: cell-type annotation for scATAC-seq data. NAR: genomics and bioinformatics 6 (4), Article lqae135 (2024)

Frank , A. K.; Chung, B. K.; De Novales, M. L. L.; Engesæter, L. K.; Hoyle , H. W.; Øgaard, J.; Heslop, J.; Karlsen, T. H.; Tysoe, O.; Brevini , T. et al.; Tchorz, J. S.; Vallier, L.; Mohorianu, I.; Sampaziotis, F.; Melum, E.: Single-Cell Transcriptomic Profiling of Cholangiocyte Organoids Derived from Bile Ducts of Primary Sclerosing Cholangitis Patients. Digestive Diseases and Sciences 69 (10), S. 3810 - 3823 (2024)

Schulz, E. G.; Martitz, A.: Structural remodeling of the inactive X chromosome during early mouse development. Nature Genetics 56 (10), S. 2004 - 2005 (2024)

Stötzel, M.; Cheng, C.-Y.; Ilik, I. A.; Sampath Kumar, A.; Akbari-Omgba, P.; van der Weijden, V. A.; Zhang, Y.; Vingron, M.; Meissner, A.; Aktas, T. et al.; Kretzmer, H.; Bulut-Karslioglu, A.: TET activity safeguards pluripotency throughout embryonic dormancy. Nature Structural & Molecular Biology 31 (10), S. 1625 - 1639 (2024)

Fleischmann, L. S.; Nemes, K.; Glaser, S.; Kouroukli, A. G.; Boros , M.; Bens, S.; Dahlum, S.; Kretzmer, H.; Oyen, F.; Gerss, J. et al.; Hasselblatt, M.; Frühwald, M. C.; Siebert, R.: Constitutional mosaicism of pathogenic variants in SMARCB1 in a subset of patients with sporadic rhabdoid tumors. Neuro-Oncology: official journal of the World Federation of Neuro-Oncology, Article noae188 (2024)

Kellner, M.; Hörmann, J.; Fackler, S.; Yuanyu, H.; Tielin, Z.; Lin, L.; Ilik, I.; Aktas, T.; Feederle, R.; Hauck, S. M. et al.; Gires, O.; Gärtner, K.; Lietao, L.; Zeidler, R.: The Nuclear Speckles Protein SRRM2 Is Exposed on the Surface of Cancer Cells. Cells 13 (18), Article 1563 (2024)