Hurtado, A.; Mota-Gómez, I.; Lao, M.; Real, F. M.; Jedamzick, J.; Burgos, M.; Lupiáñez, D. G.; Jiménez, R.; Barrionuevo, F. J.: Complete male-to-female sex reversal in XY mice lacking the miR-17~92 cluster. Nature Communications 15 (1), Article 3809 (2025)

Chteinberg, E.; Kolarova, J.; Vogt, J.; Macamo, A.; Bormann, F.; Kretzmer, H.; Speel, E. J.; van den Oord, J.; Schneider, C.; Stilgenbauer, S. et al.; Becker, J. C.; Winnepenninckx, V.; Biessen, E.; Zenke, M.; Kurz, A. K.; Siebert, R.; Zur Hausen , A.: The significance of PAX5 in Merkel cell carcinoma. The Journal of Pathology: an Official Journal of the Pathological Society of Great Britain and Ireland 266 (1), S. 81 - 94 (2025)

Glaser , S.; Fischer, A.; Martínez-Manjón, J. E.; López, C.; Kretzmer, H.; Burkhardt, B.; Hübschmann, D.; Hummel, M.; Klapper, W.; Kolarova, J. et al.; Kreuz, M.; Ott, G. e. a.: Subgrouping germinal center-derived B-cell lymphomas based on machine learning-deduced DNA methylation modules. Leukemia 39 (4), S. 967 - 971 (2025)

Berghöfer, J.; Khaveh, N.; Mundlos, S.; Metzger, J.: Multi-tool copy number detection highlights common body size-associated variants in miniature pig breeds from different geographical regions. BMC Genomics 26 (1), Article 285 (2025)

Messingschlager, M.; Mackowiak, S. D.; Voelker, M. T.; Bieg, M.; Loske, J.; Chua, R. L.; Liebig, J.; Lukassen, S.; Thürmann, L.; Seegebarth, A. et al.; Twardziok, S.; Doncevic, D.; Herrmann, C.; Lorenz, S.; Klages, S.; Steinbeis, F.; Witzenrath, M.; Kurth, F.; Conrad, C.; Sander, L. E.; Ishaque, N.; Eils, R.; Lehmann , I.; Laudi, S.; Trump, S.: DNA methylation changes during acute COVID-19 are associated with long-term transcriptional dysregulation in patients' airway epithelial cells. Embo Molecular Medicine (2025)

Gottlieb, S. G.; Reinert, K.: SeArcH schemes for Approximate stRing mAtching. NAR: genomics and bioinformatics 7 (1), Article lqaf025 (2025)

Ortuño-Costela, M. C.; Pinzani, M.; Vallier, L.: Cell therapy for liver disorders: past, present and future. Nature Reviews Gastroenterology & Hepatology (2025)

Nowatzky, Y.; Russo, F. F.; Lisec, J.; Kister, A.; Reinert, K.; Muth, T.; Benner, P.: FIORA: Local neighborhood-based prediction of compound mass spectra from single fragmentation events. Nature Communications 16 (1), Article 2298 (2025)

Abdullaev, E. T.; Haridoss, D. A.; Arndt, P. F.: Reconstruction of Segmental Duplication Rates and Associated Genomic Features by Network Analysis. Genome Biology and Evolution 17 (3), Article evaf011 (2025)

Wang, M.; Di Pietro-Torres, A.; Feregrino, C.; Luxey, M.; Moreau, C.; Fischer, S.; Fages, A.; Ritz, D.; Tschopp, P.: Distinct gene regulatory dynamics drive skeletogenic cell fate convergence during vertebrate embryogenesis. Nature Communications 16 (1), Article 2187 (2025)

Brändl, B.; Steiger, M.; Kubelt, C.; Rohrandt, C.; Zhu, Z.; Evers, M.; Wang, G.; Schuldt, B.; Afflerbach, A.-K.; Wong, D. et al.; Lum, A.; Halldorsson, S.; Djirackor, L.; Leske, H.; Magadeeva, S.; Smicius, R.; Quedenau, C.; Schmidt, N. O.; Schüller, U.; Vik-Mo, E. O.; Proescholdt, M.; Riemenschneider, M. J.; Zadeh, G.; Ammerpohl, O.; Yip, S.; Synowitz, M.; van Bömmel, A.; Kretzmer, H.; Müller, F.-J.: Rapid brain tumor classification from sparse epigenomic data. Nature Medicine 31 (3), S. 840 - 848 (2025)

Bi, Y.; Lankenau, T. L.; Lienhard, M.; Herwig, R.: IsoTools 2.0: Software for Comprehensive Analysis of Long-read Transcriptome Sequencing Data. Journal of Molecular Biology, Article 169049 (2025)

Müller, J. M.; Altendorfer, E.; Freier, S.; Moos, K.; Mayer, A.; Tresch, A.: Halfpipe: a tool for analyzing metabolic labeling RNA-seq data to quantify RNA half-lives. NAR: genomics and bioinformatics 7 (1), Article lqaf006 (2025)

Turewicz, M.; Skagen, C.; Hartwig, S.; Majda, S.; Thedinga, K.; Herwig, R.; Binsch , C.; Altenhofen, D.; Ouwens, D. M.; Förster, P. M. et al.; Wachtmeister, T.; Köhrer, K.; Stermann, T.; Chadt, A.; Lehr, S.; Marschall , T.; Thoresen, G. H.; Al-Hasani, H.: Temporal phosphoproteomics reveals circuitry of phased propagation in insulin signaling. Nature Communications 16 (1), Article 1570 (2025)

Martina, L.; Malszycki, M.; Aktas, T.: Distinct states of Nuclear Speckles emerge as new predictors of cancer prognosis. Cancer Research (2025)

Lauer, S. M.; Gasse, J.; Krizsan, A.; Reepmeyer, M.; Sprink, T.; Nikolay, R.; Spahn, C. M. T.; Hoffmann, R.: The proline-rich antimicrobial peptide Api137 disrupts large ribosomal subunit assembly and induces misfolding. Nature Communications 16 (1), Article 567 (2025)

Lazaro-Navarro, J.; Alcon, C.; Dorel, M.; Alasfar, L.; Bastian, L.; Baldus, C.; Astrahantseff, K.; Yaspo, M.-L.; Montero, J.; Eckert, C.: Inhibiting H3K27 Demethylases Downregulates CREB-CREBBP, Overcoming Resistance in Relapsed Acute Lymphoblastic Leukemia. Cancer Medicine 14 (1), S. 1 - 7 (2025)

Hiepen, C.; Benamar, M.; Barrasa-Fano, J.; Condor, M.; Ilhan, M.; Münch, J.; Hastar, N.; Kerkhoff, Y.; Harms, G. S.; Mielke, T. et al.; Koenig, B.; Block, S.; Rocks, O.; Abdelilah-Seyfried, S.; Van Oosterwyck , H.; Knaus, P.: Endothelial tip-cell position, filopodia formation and biomechanics require BMPR2 expression and signaling. Communications Biology 8 (1), Article 21 (2025)

Wiechert, F.; Unbehaun, A.; Sprink, T.; Seibel, H.; Bürger, J.; Loerke, J.; Mielke, T.; Diebolder , C. A.; Schacherl , M.; Spahn, C. M. T.: Visualizing the modification landscape of the human 60S ribosomal subunit at close to atomic resolution. Nucleic Acids Research 53 (1), Article gkae1191 (2025)

McIntyre, A. B. R.; Tschan, A. B.; Meyer, K.; Walser, S.; Rai, A. K.; Fujita, K.; Pelkmans, L.: Phosphorylation of a nuclear condensate regulates cohesion and mRNA retention. Nature Communications 16, Article 390 (2025)