Kanhere, A.; Vingron, M.: Horizontal Gene Transfers in prokaryotes show differential preferences for metabolic and translational genes. BMC Evolutionary Biology 9 (9), 1471-2148-9-9 (2009)

Pape, U. J.; Rahmann, S.; Sun, F.; Vingron, M.: Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology 15 (6), pp. 547 - 564 (2008)

Hufton, A. L.; Groth, D.; Vingron, M.; Lehrach, H.; Poustka, A. J.; Panopoulou, G.: Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Research 18 (10), pp. 1582 - 1591 (2008)

Kielbasa, S. M.; Vingron, M.: Transcriptional Autoregulatory Loops Are Highly Conserved in Vertebrate Evolution. PLoS One 3 (9), p. e3210 - e3210 (2008)

Sultan, M.; Schulz, M. H.; Hugues, R.; Magen, A.; Klingenhoff, A.; Scherf, M.; Seifert, M.; Borodina, T.; Soldatov, A.; i Parkhomchuk, D. et al.; Schmidt, D.; O'Keeffe, S.; Haas, S.; Vingron, M.; Lehrach, H.; Yaspo, M.-L.: A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome. Science 321 (5891), pp. 956 - 960 (2008)

Winter, J.; Roepcke, S.; Krause, S.; Müller, E.-C.; Otto, A.; Vingron, M.; Schweiger, S.: Comparative 3’UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines. PLoS One 3 (7), p. e2780 - e2780 (2008)

Kaluza, P.; Vingron, M.; Mikhailov, A. S.: Self-correcting networks: Function, robustness, and motif distributions in biological signal processing. Chaos: an Interdisciplinary Journal of Nonlinear Sciencc 18 (2), p. 026113 - 026113 (2008)

Toenjes, M.; Schueler, M.; Hammer, S.; Pape, U. J.; Fischer, J. J.; Felix Berger, F.; Vingron, M.; Sperling, S.: Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes. Molecular BioSystems: A New High Quality Chemical Biology Journal with A Particular Focus on the Interface between Chemistry and the -Omic Sciences and Systems Biology 4 (6), pp. 589 - 598 (2008)

Manke, T.; Roider, H. G.; Vingron, M.: Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions. PLoS Computational Biology 4 (3), p. e1000039 - e1000039 (2008)

Chen, W.; Kalscheuer, V.; Tzschach, A.; Menzel, C.; Ullmann, R.; Schulz, M. H.; Erdogan, F.; Na, L.; Kijas, Z.; Arkesteijn, G. et al.; Pajares, I. L.; Goetz-Sothmann, M.; Heinrich, U.; Rost, I.; Dufke, A.; Grasshoff, U.; Glaeser, B.; Vingron, M.; Ropers, H. H.: Mapping translocation breakpoints by next-generation sequencing. Genome Research 18 (7), pp. 1143 - 1149 (2008)

Giegerich, R.; Brazma, A.; Ukkonen, E.; Vingron, M.; Jonassen,, I.: The BREW workshop series: a stimulating experience in PhD education. Briefings in Bioinformatics 9 (3), pp. 250 - 253 (2008)

Pape, U. J.; Rahmann, S.; Vingron, M.: Natural similarity measures between position frequency matrices with an application to clustering. Bioinformatics 24 (3), pp. 350 - 357 (2008)

Arndt, P. F.; Vingron, M.: The Otto Warburg International Summer School and Workshop on Networks and Regulation. BMC Bioinformatics 8 (Suppl) (6), p. S1 - S1 (2007)

Zemojtel, T.; Penzkofer, T.; Schultz, J.; Dandekar, T.; Badge, R.; Vingron, M.: Exonization of active mouse L1s: a driver of transcriptome evolution? BMC Genomics 8, p. e392 - e392 (2007)

Grossmann, S.; Bauer, S.; Robinson, P. N.; Vingron, M.: Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis. Bioinformatics 23 (22), pp. 3024 - 3031 (2007)

Bais, A. S.; Grossmann, S.; Vingron, M.: Incorporating evolution of transcription factor binding sites into annotated alignments. Journal of Bioscience 32 (Suppl. 1), pp. 841 - 850 (2007)

Chung, H.-R.; Kostka, D.; Vingron, M.: A physical model for tiling array analysis. Bioinformatics 23 (13), pp. i80 - i86 (2007)

Messer, P. W.; Bundschuh, R.; Vingron, M.; Arndt, P. F.: Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology 14 (5), pp. 655 - 668 (2007)

Bais, A. S.; Grossmann, S.; Vingron, M.: Simultaneous alignment and annotation of cis-regulatory regions. Bioinformatics 23 (2), pp. e44 - e49 (2007)

Roider, H. G.; Kanhere, A.; Manke, T.; Vingron, M.: Predicting transcription factor affinities to DNA from a biophysical model. Bioinformatics 23 (2), pp. 134 - 141 (2007)