Publications

The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (12)

Journal Article

Hallen, L.; Klein, H.; Stoschek, C.; Wehrmeyer, S.; Nonhoff, U.; Ralser, M.; Wilde, J.; Rohr, C.; Schweiger, M. R.; Zatloukal, K. et al.; Vingron, M.; Lehrach, H.; Konthur, Z.; Krobitsch, S.: The KRAB-containing zinc-finger transcriptional regulator ZBRK1 activates SCA2 gene transcription through direct interaction with its gene product, ataxin-2. Human Molecular Genetics 20, pp. 104 - 114 (2011)

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Goke, J.; Jung, M.; Behrens, S.; Chavez, L.; O'Keeffe, S.; Timmermann, B.; Lehrach, H.; Adjaye, J.; Vingron, M.: Combinatorial binding in human and mouse embryonic stem cells identifies conserved enhancers active in early embryonic development. PLoS Comput Biol 7 (12), e1002304 (2011)

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Kolanczyk, M.; Pech, M.; Zemojte, T.; Yamamoto, H.; Mikula, I.; Calvaruso, M.-A.; van den Brand, M.; Richter, R.; Fischer, B.; Ritz, A. et al.; Kossler, N.; Thurisch, B.; Spoerle, R.; Smeitink, J.; Kornak, U.; Chan, D.; Vingron, M.; Martasek, P.; Lightowlers, R. N.; Nijtmans, L.; Schuelke, M.; Nierhaus, K. H.; Mundlos, S.: NOA1 is an essential GTPase required for mitochondrial protein synthesis. Molecular Biology of the Cell 22 (1), pp. 1 - 11 (2011)

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Lin, S.; Haas, S.; Zemojtel, T.; Xiao, P.; Vingron, M.; Li, R.: Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators. Gene 473 (2), pp. 139 - 49 (2011)

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Love, M. I.; Mysickova, A.; Sun, R.; Kalscheuer, V. M.; Vingron, M.; Haas, S. A.: Modeling read counts for CNV detection in exome sequencing data. Statistical Applications in Genetics and Molecular Biology 10 (1) (2011)

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publisher-version

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Roepcke, S.; Stahlberg, S.; Klein, H.; Schulz, M. H.; Theobald, L.; Gohlke, S.; Vingron, M.; Walther, D. J.: A tandem sequence motif acts as a distance-dependent enhancer in a set of genes involved in translation by binding the proteins NonO and SFPQ. BMC Genomics 12, p. 624 (2011)

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Serin, A.; Vingron, M.: DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach. Algorithms Mol Biol 6 (1), p. 18 (2011)

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Szczurek, E.; Markowetz, F.; Gat-Viks, I.; Biecek, P.; Tiuryn, J.; Vingron, M.: Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data. BMC Bioinformatics 12, p. 249 (2011)

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Thomas-Chollier, M.; Hufton, A.; Heinig, M.; O'Keeffe, S.; Masri, N. E.; Roider, H. G.; Manke, T.; Vingron, M.: Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs. Nat Protoc 6 (12), pp. 1860 - 9 (2011)

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Warnatz, H. J.; Schmidt, D.; Manke, T.; Piccini, I.; Sultan, M.; Borodina, T.; Balzereit, D.; Wruck, W.; Soldatov, A.; Vingron, M. et al.; Lehrach, H.; Yaspo, M. L.: The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle. The Journal of Biological Chemistry 286 (26), pp. 23521 - 32 (2011)

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Yuan, Y.; Chen, Y. P.; Ni, S.; Xu, A. G.; Tang, L.; Vingron, M.; Somel, M.; Khaitovich, P.: Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series. BMC Bioinformatics 12, p. 347 (2011)

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Zemojtel, T.; Kielbasa, S. M.; Arndt, P. F.; Behrens, S.; Bourque, G.; Vingron, M.: CpG deamination creates transcription factor-binding sites with high efficiency. Genome Biol Evol 3, pp. 1304 - 11 (2011)

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