Publications

The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (11)

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Chung, H.-R.; Dunkel, I.; Heise, F.; Linke, C.; Krobitsch, S.; Ehrenhofer-Murray, A. E.; Sperling, S. R.; Vingron, M.: The effect of MNase on nucleosome positioning data. PLoS ONE 5 (12), p. e15754 - e15754 (2010)

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Behrens, S.; Vingron, M.: Studying the evolution of promoter sequences: a waiting time problem. Journal Computational Biology 17 (12), pp. 1591 - 1606 (2010)

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Warnatz, H. J.; Querfurth, R.; Guerasimova, A.; Cheng, X.; Haas, S. A.; Hufton, A. L.; Manke, T.; Vanhecke, D.; Nietfeld, W.; Vingron, M. et al.; Janitz, M.; Lehrach, H.; Yaspo, M. L.: Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. Nucleic Acids Research 38 (18), pp. 6112 - 6123 (2010)

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Heinig, M.; Petretto, E.; Wallace, C.; Bottolo, L.; Rotival, M.; Lu, H.; Li, Y.; Sarwar, R.; Langley, S. R.; Bauerfeind, A. et al.; Hummel, O.; Lee, Y. A.; Paskas, S.; Rintisch, C.; Saar, K.; Cooper, J.; Buchan, R.; Gray, E. E.; Cyster, J. G.; Erdmann, J.; Hengstenberg, C.; Maouche, S.; Ouwehand, W. H.; Rice, C. M.; Samani, N. J.; Schunkert, H.; Goodall, A. H.; Schulz, H.; Roider, H. G.; Vingron, M.; Blankenberg, S.; Munzel, T.; Zeller, T.; Szymczak, S.; Ziegler, A.; Tiret, L.; Smyth, D. J.; Pravenec, M.; Aitman, T. J.; Cambien, F.; Clayton, D.; Todd, J. A.; Hubner, N.; Cook, S. A.: A trans-acting locus regulates an anti-viral expression network and type 1 diabetes risk. Nature 467 (7314), pp. 460 - 464 (2010)

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Szczurek, E.; Biecek, P.; Tiuryn, J.; Vingron, M.: Introducing knowledge into differential expression analysis. Journal of Computational Biology 17 (8), pp. 953 - 967 (2010)

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Kielbasa, S. M.; Klein, H.; Roider, H. G.; Vingron, M.; Blüthgen, N.: TransFind--predicting transcriptional regulators for gene sets. Nucleic Acids Research 38 Suppl, pp. W275 - W280 (2010)

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Richard, H.; Schulz, M. H.; Sultan, M.; Nurnberger, A.; Schrinner, S.; Balzereit, D.; Dagand, E.; Rasche, A.; Lehrach, H.; Vingron, M. et al.; Haas, S. A.; Yaspo, M. L.: Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments. Nucleic Acids Research 38 (10), p. e112 - e112 (2010)

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Manke, T.; Heinig, M.; Vingron, M.: Quantifying the effect of sequence variation on regulatory interactions. Hum Mutation 31 (4), pp. 477 - 483 (2010)

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Schütze, T.; Arndt, P. F.; Menger, M.; Wochner, A.; Vingron, M.; Erdmann, V. A.; Lehrach, H.; Kaps, C.; Glökler, J.: A calibrated diversity assay for nucleic acid libraries using DiStRO-a Diversity Standard of Random Oligonucleotides. Nucleic Acids Research 38 (4), p. e23 - e23 (2010)

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Karlic, R.; Chung, H. R.; Lasserre, J.; Vlahovicek, K.; Vingron, M.: Histone modification levels are predictive for gene expression. Proceedings of the National Academy of Sciences USA 107 (7), pp. 2926 - 2931 (2010)

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Meng, G.; Mosig, A.; Vingron, M.: A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes. BMC Bioinformatics 11, p. 11:267 - 11:267 (2010)

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