Max Planck Institute for Molecular Genetics

Publications

The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (15)

Journal Article

Hufton, A. L.; Mathia, S.; Braun, H.; Georgi, U.; Lehrach, H.; Vingron, M.; Poustka, A. J.; Panopoulou, G.: Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention. Genome Resaerch 19, pp. 2036 - 2051 (2009)

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Journal Article

Roider, H. G.; Lenhard, B.; Kanhere, A.; Haas, S. A.; Vingron, M.: CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses. Nucleic Acids Research 37 (19), pp. 6305 - 6315 (2009)

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Journal Article

Chavez, L.; Bais, A. S.; Vingron, M.; Lehrach, H.; Adjaye, J.; Herwig, R.: In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach. BMC Genomics 10, p. 314 - 314 (2009)

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Journal Article

Huang, X.; Vingron, M.: Maximum Similarity: A New Formulation of Phylogenetic Reconstruction. Journal of Computational Biology 16 (7), pp. 887 - 896 (2009)

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Journal Article

Szczurek, E.; Gat-Viks, I.; Tiuryn, J.; Vingron, M.: Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments. Molecular Systems Biology 5, 2009.45 (2009)

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Journal Article

Chung, H.-R.; Vingron, M.: Comparison of sequence-dependent tiling array normalization approaches. BMC Bioinformatics 10, p. 204 - 204 (2009)

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Journal Article

Roider, H. G.; Manke, T.; O'Keeffe, S.; Vingron, M.; Haas, S. A.: PASTAA: identifying transcription factors associated with sets of co-regulated genes. Bioinformatics 25 (4), pp. 435 - 442 (2009)

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Journal Article

Steinhoff,, C.; Paulsen, M.; Kielbasa, S.; Walter, J.; Vingron, M.: Expression profile and transcription factor binding site exploration of imprinted genes in human and mouse. BMC Genomics 10, p. e144 - e144 (2009)

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Journal Article

Chung, H.-R.; Vingron, M.: Sequence-dependent Nucleosome Positioning. Journal of Molecular Biology 386 (5), pp. 1411 - 1422 (2009)

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Journal Article

Pape, U. J.; Klein, H.; Vingron, M.: Statistical detection of cooperative transcription factors with similarity adjustment. Bioinformatics 25 (16), pp. 2103 - 2109 (2009)

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Journal Article

Stritt, C.; Stern, S.; Harting, K.; Manke, T.; Sinske, D.; Schwarz, H.; Vingron, M.; Nordheim, A.; Knöll, B.: Paracrine control of oligodendrocyte differentiation by SRF-directed neuronal gene expression. Nature Neuroscience 12 (4), pp. 418 - 427 (2009)

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Journal Article

Gat-Viks, I.; Vingron, M.: Evidence for Gene-Specific Rather Than Transcription Rate–Dependent Histone H3 Exchange in Yeast Coding Regions. PLoS Computational Biology 5 (2), p. e1000282 - e1000282 (2009)

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Journal Article

Zemojtel, T.; Kielbasa, S. M.; Arndt, P. F.; Chung, H.-R.; Vingron, M.: Methylation and deamination of CpGs generate p53-binding sites on a genomic scale. Trends in Genetics 25 (2), pp. 63 - 66 (2009)

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Journal Article

Vingron, M.; Brazma, A.; Coulson, R.; van Helden, J.; Manke, T.; Palin, K.; Sand, O.; Ukkonen, E.: Integrating sequence, evolution and functional genomics in regulatory genomics. Genome Biology 10 (1), p. 202 - 202 (2009)

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Journal Article

Kanhere, A.; Vingron, M.: Horizontal Gene Transfers in prokaryotes show differential preferences for metabolic and translational genes. BMC Evolutionary Biology 9 (9), 1471-2148-9-9 (2009)

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Book Chapter (1)

Book Chapter

Schulz, M. H.; Köhler, S.; Bauer, S.; Vingron, M.; Robinson, P. N.: Exact Score Distribution Computation for Similarity Searches in Ontologies. In: Algorithms in Bioinformatics, pp. 298 - 309 (Eds. Salzberg, S. L.; Warnow, T.). Springer, New York [et al] (2009)

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