All Publications

Max Planck Institute for Molecular Genetics

The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Thesis - PhD (23)

Thesis - PhD

Zehnder, T.: Computational Approaches for the Prediction of Gene Regulatory Elements and the Analysis of their Evolutionary Conservation. Dissertation, vii, 155 pp. (2021)

MPG.PuRe

Thesis - PhD

Heller, D.: Structural variant calling using third-generation sequencing data. Dissertation, xiii, 139 pp. (2021)

MPG.PuRe

Thesis - PhD

Moeinzadeh, M.: De novo and haplotype assembly of polyploid genomes. Dissertation, vii, 157 pp. (2019)

MPG.PuRe

Thesis - PhD

Ramisch, A.: Enhancer Prediction Based on Epigenomic Data. Dissertation, iv, 186 pp. (2019)

MPG.PuRe

Thesis - PhD

Pockrandt, C. M.: Approximate String Matching: Improving Data Structures and Algorithms. Dissertation, 175 pp. (2019)

MPG.PuRe

Thesis - PhD

Steiger, E.: Efficient Sparse-Group Bayesian Feature Selection for Gene Network Reconstruction. Dissertation, Freie Universität, Berlin (2018)

MPG.PuRe

Thesis - PhD

Huska, M. R.: Using machine learning to predict and better understand DNA methylation and genomic enhancers. Dissertation, viii, 143 pp., Freie Universität, Berlin (2018)

MPG.PuRe

Thesis - PhD

Helmuth, J.: Robust Normalization of Next Generation Sequencing Data. Dissertation, xii, 145 pp. (2017)

MPG.PuRe

Thesis - PhD

Kopp, W.: Statistical methods for motif hit enrichment in DNA sequences. Dissertation, 216 pp. (2017)

MPG.PuRe

Thesis - PhD

Heinrich, V.: Aspects of Quality Control for Next Generation Sequencing Data in Medical Genetics. Dissertation, vi, 137, XXVII pp pp., Freie Universität, Berlin (2017)

MPG.PuRe

Thesis - Master (6)

Thesis - Master

Hübner, P.: Association Plots – A Method to Detect Tissue-Specific Regulatory Patterns? Master (2024)

MPG.PuRe

Thesis - Master

Kane, M.: Mathematical Modeling of High-Risk Viral Mutations. Master (2024)

MPG.PuRe

Thesis - Master

Lopez Ruiz de Vargas, S.: Adding 3D chromatin structure information to enhancer- target prediction with CENTRE. Master (2024)

MPG.PuRe

Thesis - Master

Raei, W. A.: Genotyping tandem repeats: Introducing Tandem Twister, a rapid and universal tool for long-read sequencing technologies. Master (2024)

MPG.PuRe

Thesis - Master

Alavi, N.: An Unsupervised Learning Approach For Understanding Biases In Structural Variant Detection. Master (2022)

MPG.PuRe

Thesis - Master

Sliwa, P.: Heuristic Approaches To Conditional Independence Test Using Partial Distance Correlation. Master (2020)

MPG.PuRe

Other (1)

Other

Huber, W.; von Heydebreck, A.; Vingron, M.: Error models for microarray intensities, (2004)

MPG.PuRe

Preprint (4)

Preprint

Schindler, M.; Feregrino, C.; Aldrovandi, S.; Lo, B.-W.; Monaco, A. A.; Ringel, A. R.; Morales, A.; Zehnder, T.; Behncke, R. Y.; Glaser, J. et al.; Barclay, A.; Andrey, G.; Kragesteen, B. K.; Hägerling, R.; Haas, S.; Vingron, M.; Ulitsky, I.; Marti-Renom, M.; Hechavarria, J.; Fasel, P.; Hiller, M.; Lupiáñez, D.; Mundlos, S.; Real, F. M.: Comparative single-cell analyses reveal evolutionary repurposing of a conserved gene program in bat wing development. bioRxiv: the preprint server for biology (2024)

MPG.PuRe

Preprint

Schwaemmle, T.; Noviello, G.; Kanata, E.; Froehlich, J. J.; Bothe, M.; Altay, A.; Scouarnec, J.; Feng, V.-Y.; Vingron, M.; Schulz, E. G.: Reporter CRISPR screens decipher cis- and trans-regulatory principles at the Xist locus. bioRxiv (2024)

MPG.PuRe

Preprint

Glaser, J.; Cova, G.; Fauler, B.; Prada-Medina, C. A.; Stanislas, V.; Phan, M. H. Q.; Schöpflin, R.; Aktas, Y.; Franke, M.; Andrey, G. et al.; Paliou, C.; Laupert, V.; Chan, W.-L.; Wittler, L.; Mielke, T.; Mundlos, S.: Enhancer adoption by an LTR retrotransposon generates viral-like particles causing developmental limb phenotypes. bioRxiv (2024)

MPG.PuRe