All Publications

Max Planck Institute for Molecular Genetics

The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (238)

Journal Article

Sueltmann, H.; von Heydebreck, A.; Huber, W.; Kuner, R.; Buness, A.; Vogt, M.; Gunawan, B.; Vingron, M.; Fuezesi, L.; Poustka, A.: Gene Expression in Kidney Cancer Is Associated with Cytogenetic Abnormalities, Metastasis Formation, and Patient Survival. Clinical Cancer Research 11 (2 Pt 1), pp. 646 - 655 (2005)

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Philippar, U.; Schratt, G.; Dieterich, C.; Müller, J. M.; Galgóczy, P.; Engel, F. B.; Keating, M. T.; Gertler, F.; Schüle, R.; Vingron, M. et al.; Nordheim, A.: The SRF target gene Fhl2 antagonizes RhoA/MAL-dependent activation of SRF. Molecular Cell 16 (12), pp. 867 - 880 (2004)

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Gupta, S.; Zink, D.; Korn, B.; Vingron, M.; Haas, S. A.: Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing. BMC Genomics 5, p. 72 - 72 (2004)

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Rateitschak, K.; Mueller, T.; Vingron, M.: Annotating significant pairs of transcription factor binding sites in regulatory DNA. Special Issue: Ontology Workshop Tokyo 2003, p. 0040 - 0040 (2004)

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Gupta, S.; Zink, D.; Korn, B.; Vingron, M.; Haas, S. A.: Genome wide identification and classification of alternative splicing based on EST data. Bioinformatics 20 (16), pp. 2579 - 2585 (2004)

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Crass, T.; Antes, I.; Basekow, R.; Bork, P.; Buning, C.; Christensen, M.; Claußen, H.; Ebeling, C.; Ernst, P.; Gailus-Durner, V. et al.; Glatting, K.-H.; Gohla, R.; Gößling, F.; Grote, K.; Heidtke, K.; Herrmann, A.; O'Keeffe, S.; Kießlich, O.; Kolibal, S.; Korbel, J. O.; Lengauer, T.; Liebich, I.; van der Linden, M.; Luz, H.; Meissner, K.; von Mering, C.; Mevissen, H.-T.; Mewes, H.-W.; Michael, H.; Mokrejs, M.; Müller, T.; Pospisil, H.; Rarey, M.; Reich, J. G.; Schneider, R.; Schomburg, D.; Schulze-Kremer, S.; Schwarzer, K.; Sommer, I.; Springstubbe, S.; Suhai, S.; Thoppae, G.; Vingron, M.; Warfsmann, J.; Werner, T.; Wetzler, D.; Wingender, E.; Zimmer, R.: The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinformatics 20 (2), pp. 268 - 270 (2004)

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Hermjakob, H.; Montecchi-Palazzi, L.; Lewington, C.; Mudali, S.; Kerrien, S.; Orchard, S.; Vingron, M.; Roechert, B.; Roepstorff, P.; Valencia, A. et al.; Margalit, H.; Armstrong, J.; Bairoch, A.; Cesareni, G.; Sherman, D.; Apweller, R.: IntAct: an open source molecular interaction database. Nucleic Acids Research 32 (Sp. Iss. SI), pp. D452 - D455 (2004)

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von Heydebreck, A.; Sperling, S.; Kaynak, B.; Lehrach, H.; Vingron, M.: Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays - Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays. it - Information Technology 46 (1), pp. 26 - 30 (2004)

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Xue, Y. T.; Haas, S.; Brino, L.; Gusnanto, A.; Riemers, M.; Talibi, D.; Vingron, M.; Ekwall, K.; Wright, A. P. H.: A DNA microarray for fission yeast: minimal changes in global gene expression after temperature shift. Yeast 21 (1), pp. 25 - 39 (2004)

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Hild, M.; Beckmann, B.; Haas, S. A.; Koch, B.; Solovyev, V.; Busold, C.; Fellenberg, K.; Boutros, M.; Vingron, M.; Sauer, F. et al.; Hoheisel, J. D.; Paro, R.: An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome. Genome Biology 5 (1), p. R3 - R3 (2003)

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Manke, T.; Bringas, R.; Vingron, M.: Correlating protein-DNA and protein-protein interaction networks. Journal of Molecular Biology 333 (1), pp. 75 - 85 (2003)

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Haas, S. A.; Hild, M.; Wright, A. P. H.; Hain, T.; Talibi, D.; Vingron, M.: Genome-scale design of PCR primers and long oligomers for DNA microarrays. Nucleic Acids Research 31 (19), pp. 5576 - 5581 (2003)

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Kaynak, B.; von Heydebreck, A.; Mebas, S.; Seelow, D.; Vogel, J.; Sperling, H.-P.; Pregla, R.; Alexi-Meskishvili, V.; Hetzer, R.; Lange, P. E. et al.; Vingron, M.; Lehrach, H.; Sperling, S.: A genome-wide transcriptional fingerprint of normal and malformed human hearts. Circulation 107, pp. 2467 - 2474 (2003)

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Beißbarth, T.; Borisevich, I.; Hörlein, A.; Kenzelmann, M.; Hergenhahn, M.; Klewe-Nebenius, A.; Klären, R.; Korn, B.; Schmid, W.; Vingron, M. et al.; Schütz, G.: Analysis of CREM-dependent gene expression during mouse spermatogenesis. Molecular and Cellular Endocrinology 212 (1-2), pp. 29 - 39 (2003)

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Schmidt, H. A.; Petzold, E.; Vingron, M.; von Haeseler, A.: Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. Special Issue on High-Performance Computational Biology, pp. 719 - 727 (2003)

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Dieterich, C.; Herwig, R.; Vingron, M.: Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. Bioinformatics 19 (Suppl. 2), pp. ii50 - ii56 (2003)

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Panopoulou, G.; Hennig, S.; Groth, D.; Krause, A.; Poustka, A. J.; Herwig, R.; Vingron, M.; Lehrach, H.: New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes. Genome Research 13 (6), pp. 1056 - 1066 (2003)

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Kaynak, B.; von Heydebreck, A.; Mebus, S.; Seelow, D.; Hennig, S.; Vogel, J.; Sperling, H.-P.; Pregla, R.; Alexi-Meskishvili, V.; Hetzer, R. et al.; Lange, P. E.; Vingron, M.; Lehrach, H.; Sperling, S.: Genome-wide array analysis of normal and malformed human hearts. Circulation 107 (19), pp. 2467 - 2474 (2003)

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Huber, W.; von Heydebreck, A.; Sültmann, H.; Poustka, A.; Vingron, M.: Parameter estimation for the calibration and variance stabilization of microarray data. Statistical Applications in Genetics and Molecular Biology 2 (1), p. article 3 - article 3 (2003)

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Schwikowski, B.; Vingron, M.: Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. Discrete Applied Mathematics 127 (1), pp. 95 - 117 (2003)

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