Publications of Lukas Chavez

Seumois, G.; Chavez, L.; Gerasimova, A.; Lienhard, M.; Omran, N.; Kalinke, L.; Vedanayagam, M.; Ganesan, A. P. V.; Chawla, A.; Djukanović, R. et al.; Ansel, K. M.; Peters, B.; Rao, A.; Vijayanand, P.: Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility. Nature Immunology 15 (8), pp. 777 - 788 (2014)

Lienhard, M.; Grimm, C.; Morkel, M.; Herwig, R.; Chavez, L.: MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments. Bioinformatics 30 (2), pp. 284 - 286 (2014)

Lienhard, M.; Grimm, C.; Morkel, M.; Herwig, R.; Chavez, L.: MEDIPS: genome wide differential coverage analysis of sequencing data derived from DNA enrichment experiments. Bioinformatics 30 (2), pp. 284 - 286 (2014)

Lienhard, M.; Grimm, C.; Morkel, M.; Herwig, R.; Chavez, L.: MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments. Bioinformatics 30 (2), pp. 284 - 286 (2014)

Grimm, C.; Chavez, L.; Vilardell, M.; Farrall, A.; Tierling, S.; Böhm, J. W.; Grote, P.; Lienhard, M.; Dietrich, J.; Timmermann, B. et al.; Walter, J.; Schweiger, M. R.; Lehrach, H.; Herwig, R.; Herrmann, B. G.; Morkel, M.: DNA–Methylome Analysis of Mouse Intestinal Adenoma Identifies a Tumour-Specific Signature That Is Partly Conserved in Human Colon Cancer. PLoS Genetics 9 (2), p. e1003250 - e1003250 (2013)

Diedrichs, F.; Mlody, B.; Matz, P.; Fuchs, H.; Chavez, L.; Drews, K.; Adjaye, J.: Comparative molecular portraits of human unfertilized oocytes and primordial germ cells at 10 weeks of gestation. International Journal of Developmental Biology 56 (10-11-12), pp. 789 - 797 (2012)

Jozefczuk, J.; Prigione, A.; Chavez, L.; Adjaye, J.: Comparative Analysis of Human Embryonic Stem Cell and Induced Pluripotent Stem Cell-Derived Hepatocyte-Like Cells Reveals Current Drawbacks and Possible Strategies for Improved Differentiation. Stem Cells and Development 20 (7), pp. 1259 - 1275 (2011)

Goke, J.; Jung, M.; Behrens, S.; Chavez, L.; O'Keeffe, S.; Timmermann, B.; Lehrach, H.; Adjaye, J.; Vingron, M.: Combinatorial binding in human and mouse embryonic stem cells identifies conserved enhancers active in early embryonic development. PLoS Comput Biol 7 (12), e1002304 (2011)

Chavez, L.; Jozefczuk, J.; Grimm, C.; Dietrich, J.; Timmermann, B.; Lehrach, H.; Herwig, R.; Adjaye, J.: Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage. Genome Research 20, pp. 1441 - 1450 (2010)

Jung, M.; Peterson, H.; Chavez, L.; Kahlem, P.; Lehrach, H.; Vilo, J.; Adjaye, J.: A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells. PLoS ONE 5 (5), p. e10709 - e10709 (2010)

Chavez, L.; Bais, A. S.; Vingron, M.; Lehrach, H.; Adjaye, J.; Herwig, R.: In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach. BMC Genomics 10, p. 314 - 314 (2009)

Chavez, L.: Epigenetic Analysis of Human Embryonic Stem Cells: Basics, Computational Methods, Applications. Südwestdeutscher Verlag für Hochschulschriften - Imprint der SIA OmniScriptum Publishing, Riga, Lettland (2011), 140 pp.

Herwig, R.; Schuchhardt, J.; Chavez, L.; Lehrach, H.: Analyse von Biochips: von der Sequenz zum System. In: Grundlagen der Molekularen Medizin, pp. 64 - 100 (Eds. Ganten, D.; Ruckpaul, K.). Springer Verlag, Berlin [et al] (2008)

Chavez, L.: Multivariate statistical analysis of epigenetic regulation with application to the analysis of human embryonic stem cells. Dissertation, Freie Universität Berlin, Berlin (2010)