Publications of Martin Vingron
All genres
Journal Article (219)
41.
Journal Article
35 (6), pp. 1009 - 1017 (2019)
The Distance Precision Matrix: computing networks from non-linear relationships. Bioinformatics 42.
Journal Article
21 (3), pp. 305 - 310 (2019)
Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations. Nature Cell Biology 43.
Journal Article
23 (6), pp. 900 - 904 (2018)
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency - Correction. Cell Stem Cell 44.
Journal Article
16 (1), 138 (2018)
Classifying human promoters by occupancy patterns identifies recurring sequence elements, combinatorial binding, and spatial interactions. BMC Biology 45.
Journal Article
14 (11), e1007793 (2018)
Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise. PLoS Genetics 46.
Journal Article
50 (10), pp. 1463 - 1473 (2018)
Dynamic 3D chromatin architecture determines enhancer specificity and morphogenetic identity in limb development. Nature Genetics 47.
Journal Article
24 (10), pp. 2784 - 2794 (2018)
Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils. Cell Reports 48.
Journal Article
14 (8), e1006372 (2018)
coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers. PLoS Computational Biology 49.
Journal Article
23 (2), pp. 266 - 275 (2018)
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency. Cell Stem Cell 50.
Journal Article
10 (1), 10:55 (2018)
Epigenomic profiling of non-small cell lung cancer xenografts uncover LRP12 DNA methylation as predictive biomarker for carboplatin resistance. Genome Medicine 51.
Journal Article
50 (5), pp. 662 - 667 (2018)
Polymer physics predicts the effects of structural variants on chromatin architecture. Nature Genetics 52.
Journal Article
46 (6), pp. 2868 - 2882 (2018)
Genomic dissection of enhancers uncovers principles of combinatorial regulation and dynamic wiring of enhancer-promoter contacts. Nucleic Acids Research (London) 53.
Journal Article
9 (1), 1048 (2018)
Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors. Nature Communications 54.
Journal Article
33 (24), pp. 3929 - 3937 (2017)
An improved compound Poisson model for the number of motif hits in DNA sequences. Bioinformatics 55.
Journal Article
45 (19), pp. 11004 - 11018 (2017)
ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data. Nucleic Acids Research (London) 56.
Journal Article
86 (4), pp. 184 - 195 (2017)
Stochastics of Cellular Differentiation Explained by Epigenetics: The Case of T-Cell Differentiation and Functional Plasticity. Scand J Immunol 57.
Journal Article
49 (10), pp. 1539 - 1545 (2017)
Composition and dosage of a multipartite enhancer cluster control developmental expression of Ihh (Indian hedgehog). Nature Genetics 58.
Journal Article
2017 (3), pp. 696 - 703 (2017)
Haplotype-resolved sweet potato genome traces back its hexaploidization history. Nature Plants 59.
Journal Article
45 (4), pp. 1805 - 1819 (2017)
Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation. Nucleic Acids Research (London) 60.
Journal Article
27 (2), pp. 223 - 233 (2017)
Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding. Genome Research