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Journal Article (104)

  1. 21.
    Journal Article
    Charlton, J.; Downing, T. L.; Smith, Z. D.; Gu, H.; Clement, K.; Pop, R.; Akopian, V.; Klages, S.; Santos, D. P.; Tsankov, A. M. et al.; Timmermann, B.; Ziller, M. J.; Kiskinis, E.; Gnirke, A.; Meissner, A.: Author Correction: Global delay in nascent strand DNA methylation. Nature Structural and Molecular Biology 25 (4), p. 355 (2018)
  2. 22.
    Journal Article
    Charlton, J.; Downing, T. L.; Smith, Z. D.; Gu, H.; Clement, K.; Pop, R.; Akopian, V.; Klages, S.; Santos, D. P.; Tsankov, A. M. et al.; Timmermann, B.; Ziller, M. J.; Kiskinis, E.; Gnirke, A.; Meissner, A.: Global delay in nascent strand DNA methylation. Nature Structural and Molecular Biology 25 (4), pp. 327 - 332 (2018)
  3. 23.
    Journal Article
    Orgeur, M.; Martens, M.; Leonte, G.; Nassari, S.; Bonnin, M.-A.; Börno, S. T.; Timmermann, B.; Hecht, J.; Duprez, D.; Stricker, S.: Genome-wide strategies identify downstream target genes of connective tissue-associated transcription factors. Development 145 (7) (2018)
  4. 24.
    Journal Article
    Galonska, C.; Charlton, J.; Mattei, A. L.; Donaghey, J.; Clement, K.; Gu, H.; Mohammad, A. W.; Stamenova, E. K.; Cacchiarelli, D.; Klages, S. et al.; Timmermann, B.; Cantz, T.; Schöler, H. R.; Gnirke, A.; Ziller, M. J.; Meissner, A.: Genome-wide tracking of dCas9-methyltransferase footprints. Nature Communications 9 (2018)
  5. 25.
    Journal Article
    Orgeur, M.; Martens, M.; Börno, S. T.; Timmermann, B.; Duprez, D.; Stricker, S.: A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model. Biology Open 7 (1) (2018)
  6. 26.
    Journal Article
    Gardner, E. J.; Lam, V. K.; Harris, D. N.; Chuang, N. T.; Scott, E. C.; Pittard, W. S.; Mills, R. E.; 1000 Genomes Project, C.; Timmermann, B.; Devine, S. E.: The Mobile Element Locator Tool (MELT): Population-scale mobile element discovery and biology. Genome Research 27 (11), pp. 1916 - 1929 (2017)
  7. 27.
    Journal Article
    Vallecillo-García, P.; Orgeur, M.; vom Hofe-Schneider, S.; Stumm, J.; Kappert, V.; Ibrahim, D.; Börno, S. T.; Hayashi, S.; Relaix, F.; Hildebrandt, K. et al.; Sengle, G.; Koch, M.; Timmermann, B.; Marazzi, G.; Sassoon, D. A.; Duprez, D.; Stricker, S.: Odd skipped-related 1 identifies a population of embryonic fibro-adipogenic progenitors regulating myogenesis during limb development. Nature Communications 8 (1) (2017)
  8. 28.
    Journal Article
    Woodsmith, J.; Apelt, L.; Casado-Medrano, V.; Özkan, Z.; Timmermann, B.; Stelzl, U.: Protein interaction perturbation profiling at amino-acid resolution. Nature methods 14 (12) (2017)
  9. 29.
    Journal Article
    Binder, H.; Hopp, L.; Schweiger, M. R.; Hoffmann, S.; Jühling, F.; Kerick, M.; Timmermann, B.; Siebert, S.; Grimm, C.; Nersisyan, L. et al.; Arakelyan, A.; Herberg, M.; Buske, P.; Loeffler-Wirth, H.; Rosolowski, M.; Engel, C.; Przybilla, J.; Peifer, M.; Friedrichs, N.; Moeslein, G.; Odenthal, M.; Hussong, M.; Peters, S.; Holzapfel, S.; Nattermann, J.; Hueneburg, R.; Schmiegel, W.; Royer-Pokora, B.; Aretz, S.; Kloth, M.; Kloor, M.; Buettner, R.; Galle, J.; Loeffler, M.: Genomic and transcriptomic heterogeneity of colorectal tumors arising in Lynch Syndrome. The Journal of Pathology: an Official Journal of the Pathological Society of Great Britain and Ireland 243 (2), pp. 242 - 254 (2017)
  10. 30.
    Journal Article
    Herdt, O.; Neumann, A.; Timmermann, B.; Heyd, F.: The cancer-associated U2AF35 470A>G (Q157R) mutation creates an in-frame alternative 5’ splice site that impacts on splicing regulation in Q157R patients. RNA 2017 (2017)
  11. 31.
    Journal Article
    Koch, F.; Scholze, M.; Wittler, L.; Schifferl, D.; Sudheer, S.; Grote, P.; Timmermann, B.; Macura, K.; Herrmann, B. G.: Antagonistic Activities of Sox2 and Brachyury Control the Fate Choice of Neuro-Mesodermal Progenitors. Developmental Cell 42, pp. 514 - 526 (2017)
  12. 32.
    Journal Article
    Lim, S.-Y.; Macheleidt, I.; Dalvi, P.; Schäfer, S. C.; Kerick, M.; Ozretić, L.; Ortiz-Cuaran, S.; George, J.; Merkelbach-Bruse, S.; Wolf, J. et al.; Timmermann, B.; Thomas, R. K.; Schweiger, M. R.; Buettner, R.; Odenthal, M.: LSD1 modulates the non-canonical integrin β3 signaling pathway in non-small cell lung carcinoma cells. Scientific Reports 7 (2017)
  13. 33.
    Journal Article
    Yang, J.; Moeinzadeh, M. H.; Kuhl, H.; Helmuth, J.; Xiao, P.; Haas, S.; Liu, G.; Zheng, J.; Sun, Z.; Fan, W. et al.; Deng, G.; Wang, H.; Hu, F.; Zhao, S.; Fernie, A. R.; Börno, S. T.; Timmermann, B.; Zhang, P.; Vingron, M.: Haplotype-resolved sweet potato genome traces back its hexaploidization history. Nature Plants 2017 (3) (2017)
  14. 34.
    Journal Article
    Zheng-Bradley, X.; Streeter, I.; Fairley, S.; Richardson, D.; Clarke, L.; Flicek, P.; 1000 Genomes Project , C.; Timmermann, B.: Alignment of 1000 Genomes Project Reads to Reference Assembly GRCh38. GigaScience 6 (7), pp. 1 - 8 (2017)
  15. 35.
    Journal Article
    Lange, L.; Marks, M.; Liu, J.; Wittler, L.; Bauer, H.; Piehl, S.; Bläß, G.; Timmermann, B.; Herrmann, B. G.: Pattering and gastrulation deffects caused by the tw18 lethal are due to loss of Ppp2r1a. Biology Open 6 (6) (2017)
  16. 36.
    Journal Article
    Xu, S.; Brockmoeller, T.; Navarro-Quezada, A.; Kuhl, H.; Gase, K.; Ling, Z.; Zhou, W.; Kreitzer, C.; Stanke, M.; Tang, H. et al.; Lyons, E.; Pandey, P.; Pandey, S. P.; Timmermann, B.; Gaquerel, E.; Baldwin, I. T.: Wild tobacco genomes reveal the evolution of nicotine biosynthesis. Proceedings of the National Academy of Sciences of the United States of America 114 (23), pp. 6133 - 6138 (2017)
  17. 37.
    Journal Article
    Twardziok, M.; Meierhofer, D.; Börno, S. T.; Timmermann, B.; Jäger, S.; Boral, S.; Eggert, A.; Delebinski, C. I.; Seifeert, G.: Transcriptomic and proteomic insight into the effects of a defined European mistletoe extract in Ewing sarcoma cells reveals cellular stress responses. BMC Complementary and Alternative Medicine 2017 (2017)
  18. 38.
    Journal Article
    Lienhard, M.; Grasse, S.; Rolff, J.; Frese, S.; Schirmer, U.; Becker, M.; Börno, S. T.; Timmermann, B.; Chavez, L.; Sültmann, H. et al.; Leschber, G.; Fichtner, I.; Schweiger, M. R.; Herwig, R.: QSEA – modelling of genome-wide DNA methylation from sequencing enrichment experiments. Nucleic Acids Research (London) 45 (6) (2017)
  19. 39.
    Journal Article
    Andrey, G.; Schöpflin, R.; Jerković, I.; Heinrich, V.; Ibrahim, D.; Paliou, C.; Hochradel, M.; Timmermann, B.; Haas, S.; Vingron, M. et al.; Mundlos, S.: Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding. Genome Research 27 (2), pp. 223 - 233 (2017)
  20. 40.
    Journal Article
    Hussong, M.; Kaehler, C.; Kerick, M.; Grimm, C.; Franz, A.; Timmermann, B.; Welzel, F.; Isensee, J.; Hucho, T.; Krobitsch, S. et al.; Schweiger, M. R.: The bromodomain protein BRD4 regulates splicing during heat shock. Nucleic Acids Research (London) 45 (1), pp. 382 - 394 (2017)
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