Publications of Sven Rahmann

Pape, U. J.; Rahmann, S.; Sun, F.; Vingron, M.: Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology 15 (6), pp. 547 - 564 (2008)

Pape, U. J.; Rahmann, S.; Vingron, M.: Natural similarity measures between position frequency matrices with an application to clustering. Bioinformatics 24 (3), pp. 350 - 357 (2008)

Roepcke, S.; Grossmann, S.; Rahmann, S.; Vingron, M.: T-Reg Comparator: an analysis tool for the comparison of position weight matrices. Web Server Issue, pp. W438 - W341 (2005)

Rivals, E.; Rahmann, S.: Combinatorics of periods in strings. Journal of Combinatorial Theory Series A 104 (1), pp. 95 - 113 (2003)

Rahmann, S.: The shortest common supersequence problem in a microarray production setting. Proceedings of the European Conference on Computational Biology (ECCB 2003), pp. ii156 - ii161 (2003)

Rahmann, S.: Fast large scale oligonucleotide selection using the longest common factor approach. Journal of Bioinformatics and Computational Biology 1 (2), pp. 343 - 361 (2003)

Rahmann, S.: On the distribution of the number of missing words in Random texts. Combinatorics, Probability and Computing 12 (1), pp. 72 - 87 (2003)

Rahmann, S.: Dynamic programming algorithms for two statistical problems in computational biology. Algorithms in Bioinformatics, Proceedings 2812, pp. 151 - 164 (2003)

Rahmann, S.; Müller, T.; Vingron, M.: On the power of profiles for transcription factor binding site detection. Statistical Applications in Genetics and Molecular Biology 2 (1), p. article 7 - article 7 (2003)

Klau, G. W.; Rahmann, S.; Schliep, A.; Vingron, M.; Reinert, K.: Integer linear programming approaches for non-unique probe selection. In: Discrete Mathematics and Data Mining II - DM & DM II, pp. 840 - 856 (Eds. Anthony, M.H.G.; Boros, E.; Hammer, P.L.; Kogan, A.). Elsevier, Amsterdam et al (2007)

Klau, G. W.; Rahmann, S.; Schliep, A.; Vingron, M.; Reinert, K.: Optimal robust non-unique probe selection using Integer Linear Programming. Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology, Glasgow, UK, July 31, 2004 - August 04, 2004. Bioinformatics 20 (Suppl.), pp. i186 - i193 (2004)

Dieterich, C.; Rahmann, S.; Vingron, M.: Functional inference from non-random distributions of conserved predicted transcription factor binding sites. Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology, Glasgow, UK, July 31, 2004 - August 04, 2004. Bioinformatics 20 (Suppl.), pp. i109 - i115 (2004)

Müller, T.; Rahmann, S.; Dandekar, T.; Wolf, M.: Robust estimation of the phylogeny of chlorophyceae (chlorophyta) based on profile distances. In: Proceedings of the German Conference on Bioinformatics (GCB '03), pp. 97 - 101 (Eds. Mewes, H.-W.; Frishman, D.; Heun, V.; Kramer, S.). German Conference on Bioinformatics (GCB '03), Neuherberg/Garching near Munich, October 12, 2003 - October 14, 2003. (2003)

Rahmann, S.: Fast and sensitive probe selection for DNA chips using jumps in matching statistics. In: PROCEEDINGS OF THE 2nd IEEE COMPUTER SOCIETY BIOINFORMATICS CONFERENCE (CSB '03), pp. 57 - 64. IEEE Computer Society Bioinformatics Conference (CSB '03), Stanford, California, August 11, 2003 - August 14, 2003. IEEE (2003)

Rahmann, S.: Dynamic programming algorithms for two statistical problems in computational biology. In: Algorithms in Bioinformatics, pp. 151 - 164 (Eds. Benson, G.; Page, R.). Third International Workshop on Algorithms in Bioinformatics, WABI 2003, Budapest, Hungary, September 15, 2003 - September 20, 2003. Springer (2003)

Schliep, A.; Torney, D. C.; Rahmann, S.: Group testing with DNA chips: generating designs and decoding experiments. In: PROCEEDINGS OF THE 2nd IEEE COMPUTER SOCIETY BIOINFORMATICS CONFERENCE (CSB '03), pp. 84 - 93. IEEE Computer Society Bioinformatics Conference (CSB '03), Stanford, California, August 11, 2003 - August 14, 2003. IEEE (2003)

Rahmann, S.: Rapid Large-Scale Selection of Oligonucleotides for Microarrays. First IEEE Computer Society Bioinformatics Conference 2002 (CSB 2002), Stanford University, Palo Alto, CA, August 14, 2002 - August 16, 2002. / (/), pp. 54 - 63 (2002)

Rahmann, S.; Müller, T.: A New Formulation of Evolutionary Models. In: RECOMB 2002, pp. 156 - 157. The Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB 2002), Washington DC, USA, April 18, 2002 - April 21, 2002. (2002)