| Name |
Thesis |
submitted |
| Wasinee Rungsarityotin |
Algorithms to Identify Protein Complexes from High-Throughput Data |
Jun 2007 |
| Philipp Messer |
Tandem Duplications in the Human Genome |
Feb 2008 |
| Zhike Zi |
Mathematical Modeling and Kinetic Analysis of Cellular Signaling Pathways |
Apr 2008 |
| Markus Bauer |
A Combinatorial Approach to RNA Sequence-Structure Alignments |
Apr 2008 |
| Utz J. Pape |
Statistics for Transcription Factor Binding Sites |
Jul 2008 |
| Ole Schulz-Trieglaff |
Computational Methods for Quantitative Peptide Mass Spectrometry |
Oct 2008 |
| Evelyn Dittmer |
Hidden Markov Models with Time-Continuous Output Behavior |
Nov 2008 |
| Andrea Weiße |
Global Sensitivity Analysis of Ordinary Differential Equations |
Apr 2009 |
| Tobias Rausch |
Dissecting Multiple Sequence Alignment Methods |
Sep 2009 |
| Federico Squartini |
Stationarity and Reversibility in the Nucleotide Evolutionary Process |
Mar 2010 |
| Ben-Fillippo Krippendorff |
Integrating Cell-level Kinetic Modeling into the Optimization of Cancer Therapeutics |
Apr 2010 |
| Paz Polak |
Discovering Mutational Patterns in Mammals Using Comparative Genomics |
Jun 2010 |
| Marcel Schulz |
Data Structures and Algorithms for Analysis of Alternative Splicing with RNA-seq Data |
Jul 2010 |
| Ewa Szczurek |
Modelling Signal Transduction Pathways and Their Transcriptional Response |
Oct 2010 |
| Sayed-Amir Marashi |
Constraint-based Analysis of Substructures of Metabolic Networks |
Apr 2011 |
| Atanas Kamburov |
More Accurate Interactomes for Elucidating the Mechanisms of Complex Diseases |
Aug 2011 |
| Henning Stehr |
Graph-based Approaches to Protein Structure- and Function Prediction |
May 2011 |
| Akdes Serin |
Biclustering Analysis for Large Scale Data |
Sep 2011 |
| Rosa Karlić |
Influence of Histone Modifications on mRNA Abundance and Structure |
Sep 2011 |
| Martin Held |
Novel Concepts to Study Conformation and Association Dynamics of Biomolecules |
Jan 2012 |
| Jonathan Göke |
Analysis of Long-Distance Gene Regulatory Elements |
May 2012 |
| Martina Fröhlich |
Computational and Experimental Investigation of the Mechanisms Involved in Cellular Water Transport and (Cat)ion Homeostasis |
May 2012 |
| Chris Bielow |
Quantication and Simulation of Liquid Chromatography-Mass Spectrometry Data |
Jun 2012 |
| Yves Clément |
The Evolution of Base Composition in Mammalian Genomes |
Aug 2012 |
| Christian Diener |
Localized Signaling and Communication during Yeast Mating |
Sep 2012 |
| Marvin Schulz |
Identification of Potential Drug Targets in Kinetic Networks Described by Ordinary Differential Equations |
Sep 2012 |
| Anne-Katrin Emde |
Next-Generation Sequencing Algorithms: From Read Mapping to Variant Detection |
Nov 2012 |
| Michael Love |
Statistical Analysis of High-Throughput Sequencing Count Data |
Jun 2013 |
| Stephan Aiche |
Inferring Proteolytic Processes from Mass Spectrometry Time Series Data |
May 2013 |
| Birte Kehr |
Contributions to Computing and Modeling Multiple Whole-Genome Alignments |
Nov 2013 |
| Arne Reimers |
Metabolic Networks, Thermodynamic Constraints, and Matroid Theory |
Jun 2014 |
| Johannes Schöneberg |
Reaction-Diffusion Dynamics in Biological Systems |
Jul 2014 |
| Sharon Hüffner |
Modularity in Biological Networks |
Apr 2014 |
| Sandro Andreotti |
Linear Programming and Integer Linear Programming in Bioinformatics |
Sep 2014 |
| Alena van Bömmel |
Prediction of transcription factor co-occurrence using rank based statistics |
Jul 2014 |
| Enrico Siragusa |
Approximate string matching for high-throughput sequencing |
May 2015 |
| Juliane Perner |
Bioinformatic Approaches for Understanding Chromatin Regulation |
Jun 2015 |
| Han Cheng Lie |
On a strongly convex approximation of a stochastic optimal control problem for importance sampling of metastable diffusions |
Sep 2015 |
| Alessandro Mammana |
Patterns and algorithms in high-throughput sequencing count data |
Sep 2015 |
| Xintian You |
Tailored Analysis in Studying Transcriptome Landscape |
Sep 2015 |
| Iliusi Vega del Valle |
Reconstruction and analysis of the state space for the identification of dynamical states in real-world time series |
Jan 2016 |
| Wolfgang Kopp |
Statistical methods for motif hit enrichment in DNA sequences |
Oct 2016 |
| Johannes Helmuth |
Robust normalization of next generation sequencing data |
Feb 2017 |
| Kirsten Thobe |
Logical modeling of uncertainty in signaling pathways of cancer systems |
Mar 2017 |
| Matthias Lienhard |
Computational analysis of genome-wide methylation enrichment experiments |
Mar 2017 |
| Alexandra Reimers |
Understanding metabolic regulation and cellular resource allocation through optimization |
Aug 2017 |
| Matthew Huska |
Using machine learning to predict and better understand DNA methylation and genomic enhancers |
Aug 2017 |
| Sven-Leon Kuchenbecker |
Analysis of Antigen Receptor Repertoires Captured by High Throughput Sequencing |
Jan 2018 |
| Christoph Gorgulla |
Free Energy Methods Involving Quantum Physics, Path Integrals, and Virtual Screenings: Development, Implementation and Application in Drug Discovery |
Apr 2018 |
| Evgenia Youett |
Adaptive Multilevel Monte Carlo Methods for Random Elliptic Problems |
Jun 2018 |
| Mohammadhossein Moeinzadeh |
De novo and haplotype assembly of polyploid genomes |
Aug 2018 |
| Christopher M. Pockrandt |
Approximate String Matching - Improving Data Structures and Algorithms |
Feb 2019 |
| Temesgen Hailemariam Dadi |
Whole Genome Shotgun Sequencing Based Taxonomic Profiling Methods for Comparative Study of Microbial Communities |
Jan 2019 |
| Anna Ramisch |
Enhancer Prediction Based on Epigenomic Data |
Feb 2019 |
| Sabrina Krakau |
Statistical models to capture protein-RNA interaction footprints from truncation-based CLIP-seq data |
Jan 2019 |
| Hongqing Han |
Towards accurate and efficient live cell imaging data analysis |
Dec 2019 |
| Stefan Budach |
Explainable Deep Learning Models for Biological Sequence Classification |
Dec 2019 |
| Lisa Barros de Andrade e Sousa |
Using interpretable machine learning to understand gene silencing dynamics during X-chromosome inactivation |
Jan 2020 |
| Tobias Zehnder |
Computational approaches for the prediction of gene regulatory elements and the analysis of their evolutionary conservation |
Sep 2020 |
| David Heller |
Structural variant calling using third-generation sequencing data |
Sep 2020 |
| Gal Barel |
Network propagation with node core for genotype-phenotype associations and module identification |
Sep 2020 |