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1
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Wasinee Rungsarityotin
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CBSC
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Algorithms to Identify Protein Complexes from High-Throughput Data
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Jun 2007
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2
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Philipp Messer
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CBSC
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Tandem Duplications in the Human Genome
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Feb 2008
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3
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Zhike Zi
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CBSC
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Mathematical Modeling and Kinetic Analysis of Cellular Signaling Pathways
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Apr 2008
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4
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Markus Bauer
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CBSC
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A Combinatorial Approach to RNA Sequence-Structure Alignments
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Apr 2008
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5
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Utz J. Pape
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CBSC
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Statistics for Transcription Factor Binding Sites
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Jul 2008
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6
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Ole Schulz-Trieglaff
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CBSC
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Computational Methods for Quantitative Peptide Mass Spectrometry
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Oct 2008
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7
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Evelyn Dittmer
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CBSC
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Hidden Markov Models with Time-Continuous Output Behavior
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Nov 2008
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8
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Andrea Weiße
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CBSC
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Global Sensitivity Analysis of Ordinary Differential Equations
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Apr 2009
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9
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Tobias Rausch
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CBSC
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Dissecting Multiple Sequence Alignment Methods
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Sep 2009
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10
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Federico Squartini
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CBSC
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Stationarity and Reversibility in the Nucleotide Evolutionary Process
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Mar 2010
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11
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Ben-Fillippo Krippendorff
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CBSC
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Integrating Cell-level Kinetic Modeling into the Optimization of Cancer Therapeutics
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Apr 2010
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12
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Paz Polak
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CBSC
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Discovering Mutational Patterns in Mammals Using Comparative Genomics
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Jun 2010
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13
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Marcel Schulz
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CBSC
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Data Structures and Algorithms for Analysis of Alternative Splicing with RNA-seq Data
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Jul 2010
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14
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Ewa Szczurek
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CBSC
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Modelling Signal Transduction Pathways and Their Transcriptional Response
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Oct 2010
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15
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Sayed-Amir Marashi
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CBSC
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Constraint-based Analysis of Substructures of Metabolic Networks
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Apr 2011
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16
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Atanas Kamburov
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CBSC
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More Accurate Interactomes for Elucidating the Mechanisms of Complex Diseases
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Aug 2011
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17
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Henning Stehr
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CBSC
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Graph-based Approaches to Protein Structure- and Function Prediction
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May 2011
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18
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Akdes Serin
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CBSC
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Biclustering Analysis for Large Scale Data
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Sep 2011
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19
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Rosa Karlić
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CBSC
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Influence of Histone Modifications on mRNA Abundance and Structure
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Sep 2011
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20
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Martin Held
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CBSC
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Novel Concepts to Study Conformation and Association Dynamics of Biomolecules
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Jan 2012
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21
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Jonathan Göke
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CBSC
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Analysis of Long-Distance Gene Regulatory Elements
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May 2012
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22
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Martina Fröhlich
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CBSC
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Computational and Experimental Investigation of the Mechanisms Involved in Cellular Water Transport and (Cat)ion Homeostasis
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May 2012
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23
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Chris Bielow
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CBSC
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Quantication and Simulation of Liquid Chromatography-Mass Spectrometry Data
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Jun 2012
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24
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Yves Clément
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CBSC
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The Evolution of Base Composition in Mammalian Genomes
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Aug 2012
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25
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Christian Diener
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CBSC
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Localized Signaling and Communication during Yeast Mating
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Sep 2012
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26
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Marvin Schulz
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CBSC
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Identification of Potential Drug Targets in Kinetic Networks Described by Ordinary Differential Equations
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Sep 2012
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27
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Anne-Katrin Emde
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CBSC
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Next-Generation Sequencing Algorithms: From Read Mapping to Variant Detection
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Nov 2012
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28
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Michael Love
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CBSC
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Statistical Analysis of High-Throughput Sequencing Count Data
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Jun 2013
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29
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Stephan Aiche
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CBSC
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Inferring Proteolytic Processes from Mass Spectrometry Time Series Data
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May 2013
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30
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Birte Kehr
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CBSC
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Contributions to Computing and Modeling Multiple Whole-Genome Alignments
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Nov 2013
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31
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Arne Reimers
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CBSC
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Metabolic Networks, Thermodynamic Constraints, and Matroid Theory
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Jun 2014
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32
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Johannes Schöneberg
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CBSC
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Reaction-Diffusion Dynamics in Biological Systems
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Jul 2014
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33
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Sharon Hüffner
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CBSC
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Modularity in Biological Networks
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Apr 2014
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34
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Sandro Andreotti
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CBSC
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Linear Programming and Integer Linear Programming in Bioinformatics
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Sep 2014
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35
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Alena van Bömmel
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CBSC
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Prediction of transcription factor co-occurrence using rank based statistics
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Jul 2014
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36
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Enrico Siragusa
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CBSC
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Approximate string matching for high-throughput sequencing
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May 2015
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37
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Juliane Perner
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CBSC
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Bioinformatic Approaches for Understanding Chromatin Regulation
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Jun 2015
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38
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Han Cheng Lie
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CBSC
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On a strongly convex approximation of a stochastic optimal control problem for importance sampling of metastable diffusions
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Sep 2015
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39
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Alessandro Mammana
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CBSC
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Patterns and algorithms in high-throughput sequencing count data
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Sep 2015
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40
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Xintian You
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CBSC
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Tailored Analysis in Studying Transcriptome Landscape
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Sep 2015
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41
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Iliusi Vega del Valle
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CBSC
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Reconstruction and analysis of the state space for the identification of dynamical states in real-world time series
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Jan 2016
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42
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Wolfgang Kopp
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CBSC
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Statistical methods for motif hit enrichment in DNA sequences
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Oct 2016
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43
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Johannes Helmuth
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CBSC
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Robust normalization of next generation sequencing data
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Feb 2017
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44
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Kirsten Thobe
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CBSC
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Logical modeling of uncertainty in signaling pathways of cancer systems
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Mar 2017
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45
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Matthias Lienhard
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CBSC
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Computational analysis of genome-wide methylation enrichment experiments
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Mar 2017
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46
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Alexandra Reimers
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CBSC
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Understanding metabolic regulation and cellular resource allocation through optimization
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Aug 2017
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47
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Matthew Huska
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CBSC
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Using machine learning to predict and better understand DNA methylation and genomic enhancers
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Aug 2017
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48
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Sven-Leon Kuchenbecker
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CBSC
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Analysis of Antigen Receptor Repertoires Captured by High Throughput Sequencing
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Jan 2018
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49
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Christoph Gorgulla
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CBSC
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Free Energy Methods Involving Quantum Physics, Path Integrals, and Virtual Screenings: Development, Implementation and Application in Drug Discovery
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Apr 2018
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50
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Evgenia Youett
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CBSC
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Adaptive Multilevel Monte Carlo Methods for Random Elliptic Problems
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Jun 2018
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51
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Mohammadhossein Moeinzadeh
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CBSC
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De novo and haplotype assembly of polyploid genomes
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Aug 2018
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52
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Christopher M. Pockrandt
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CBSC
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Approximate String Matching - Improving Data Structures and Algorithms
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Feb 2019
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53
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Temesgen Hailemariam Dadi
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CBSC
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Whole Genome Shotgun Sequencing Based Taxonomic Profiling Methods for Comparative Study of Microbial Communities
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Jan 2019
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54
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Anna Ramisch
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CBSC
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Enhancer Prediction Based on Epigenomic Data
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Feb 2019
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55
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Sabrina Krakau
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CBSC
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Statistical models to capture protein-RNA interaction footprints from truncation-based CLIP-seq data
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Jan 2019
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56
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Luigi Sbailò
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CBSC
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Efficient multi-scale sampling methods in statistical physics
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Sep 2019
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57
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Hongqing Han
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CBSC
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Towards accurate and efficient live cell imaging data analysis
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Dec 2019
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58
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Stefan Budach
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CBSC
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Explainable Deep Learning Models for Biological Sequence Classification
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Dec 2019
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59
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Lisa Barros de Andrade e Sousa
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CBSC
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Using interpretable machine learning to understand gene silencing dynamics during X-chromosome inactivation
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Jan 2020
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60
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Tobias Zehnder
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CBSC
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Computational approaches for the prediction of gene regulatory elements and the analysis of their evolutionary conservation
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Sep 2020
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61
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David Heller
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CBSC
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Structural variant calling using third-generation sequencing data
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Sep 2020
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62
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Gal Barel
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CBSC
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Network propagation with node core for genotype-phenotype associations and module identification
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Sep 2020
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63
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Roman Schulte-Sasse
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CBSC
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Integration of multi-omics data with graph convolutional networks to identify cancer-associated genes
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Dec 2020
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64
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Melissa Bothe
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CBSC
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Investigating the genomic effects of glucocorticoid receptor activation - an analysis of transcriptional memory and mechanisms that direct divergent genomic occupancy of related transcription factors
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Mar 2021
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65
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Vı́ctor Mireles Chávez
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CBSC
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Finding Reusable Modules Using Sparse Matrix Decompositions
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July 2021
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66
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Martyna Gajos
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CBSC
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Analysis of the determinants of Pol II pausing
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Feb 2022
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67
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Elzbieta Gralinska
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CBSC
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Association Plots visualize cluster-specific genes from high-dimensional transcriptomics data
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April 2022
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68
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Eldar Abdullaev
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CBSC
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Dynamical Aspects of the Evolution of Segmental Duplications in the Human Genome
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April 2022
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69
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Lam-Ha Ly
|
CBSC
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Deciphering cellular heterogeneity by single-cell transcriptome analysis
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April 2022
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70
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Philip Kleinert
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CBSC
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Computational interpretation of disease-causing, structural, and non-coding human genetic variants
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June 2022
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71
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Annkatrin Bressin
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CBSC
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A Multi-Omics Analysis of Transcription Control by BRD4
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May 2022
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72
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Shroddha Bose
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BAC
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The effect of a gain-of-function mutation in the Cl-/H+ exchanger ClC-7 in lysosomal and mitochondrial morphology and function
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June 2022
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73
|
Shaon Basu
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BAC
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Genetic and chemical hydrophobic modification of transcription factor condensates in human disease
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September 2022
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74
|
Jörg Winkler
|
CBSC
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Algorithms for finding RNA sequence-structure motifs
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September 2022
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75
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Laura Cifuentes Fontanals
|
CBSC
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Methods for control strategy identification in Boolean networks
|
October 2022
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76
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Natalia López Anguita
|
BAC
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Impact of hypoxia on embryonic and extraembryonic stem cells and during differentiation via gastruloid formation
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November 2022
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77
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Amèlia Aragonés Hernández
|
BAC
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Identification of Protogenin as a novel surface marker for early cortical neural stem cells
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December 2022
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78
|
Daniel Rosebrock
|
CBSC
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Dissecting regional heterogeneity and modeling transcriptional cascades in brain organoids
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December 2022
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79
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Bruna Los
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BAC
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Body temperature-controlled antiviral response and SARS-CoV-2 replication
|
April 2023
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80
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Sara Hetzel
|
CBSC
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Investigation of DNA methylation heterogeneity in cancer
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June 2023
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81
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Melania Nowicka
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CBSC
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Design and multi-criteria optimization of cell classifier circuits in cancer therapy
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June 2023
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82
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Vahid Asimi
|
BAC
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Roles of endogenous retroviruses in transcriptional condensates
|
June 2023
|
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83
|
Paul-Lennard Mendez
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BAC
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Mechano-sensitivity of vascular BMP signaling - Insights into Fluid Shear Stress modulations from ligand to chromatin
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July 2023
|
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84
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Mitra Darja Darvish
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BAC
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Utilizing alignment-free methods to enable quantitative gene expression analysis of large collections of sequencing data
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August 2023
|
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85
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Gözde Kibar
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CBSC
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Exploring feature identification and machine learning in predicting protein-protein interactions of disordered proteins
|
October 2023
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86
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Jana Henck
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BAC
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Single cell sequencing as a phenotyping strategy to decipher the molecular mechanisms of developmental disorder
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October 2023
|
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87
|
Dhanur Iyer
|
BAC
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The molecular landscape of developmental pausing in mammals
|
November 2023
|
|
88
|
Guido Pacini
|
CBSC
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Transcriptome regulation during the X chromosome inactivation process
|
December 2023
|
|
89
|
Claire Jourdain
|
BAC
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Role of the putative cohesin cofactors PDS5A and PDS5C in nuclear organization and gene regulation
|
February 2024
|
|
90
|
Anna Kristina Thedinga
|
BAC
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Machine Learning for Cancer Survival Prediction
|
March 2024
|
|
91
|
Gaojianyong Wang
|
BAC
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Copy number variation characterization using nanopore sequencing
|
May 2024
|
|
92
|
Nadezhda Malysheva
|
CBSC
|
Hybrid algorithm for efficient simulation of spreading processes on adaptive networks
|
June 2024
|
|
93
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Julian Naderi
|
BAC
|
The dispersion of aromatic residues in TF IDRs controls a molecular trade-off between activity and specificity
|
June 2024
|
|
94
|
Gopika Sasikumar
|
BAC
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Allosteric small-molecule probes to study splicing switches via conformational control of a spliceosomal RNA helicase
|
July 2024
|
|
95
|
Jeong-Eun Lee
|
BAC
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Regulatory divergence of ZEB2 in human brain evolution
|
December 2024
|
|
96
|
Fatemeh Zebardast
|
BAC
|
Exploring Alzheimer's Disease Pathology Using Gene Co-Expression Networks: Insights into lncRNA and Protein-coding Genes Dysregulation
|
January 2025
|
|
97
|
Philine Guckelberger
|
BAC
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Investigating the role of chromatin regulators in genome function
|
January 2025
|
|
98
|
Biswajit Ghosh
|
BAC
|
Unveiling the Epigenetic Role of
Arabidopsis
PWO1: Linking Linear Chromatin Features to 3D Genome Architecture
|
January 2025
|
|
99
|
Tom Altenburg
|
CBSC
|
Interpretable Deep Learning Approaches for the Robust Identification of Peptidoforms in Mass Spectrometry-based Proteomics
|
January 2025
|
|
100
|
Francesca Rossi
|
BAC
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Decoding the role of PHF13 in genome regulation and chromatin organization
|
April 2025
|