Publications of Ralf Herwig

The 1000 Genomes Project Consortium; Sudbrak, R.; Albrecht, M.; Amstislavskiy, V.; Borodina, T. A.; Dahl, A.; Davydov, A.; Herwig, R.; Marquardt, P.; Mertes, F. et al.; Nietfeld, W.; Parkhomchuk, D.; Soldatov, A.; Timmermann, B.; Tolzmann, M.; Lehrach, H.: The 1000 Genomes Project: data management and community access. Nature methods 9 (5), pp. 459 - 462 (2012)

MacArthur, D. G.; Balasubramanian, S.; Frankish, A.; 1000 Genomes Project, C.; Sudbrak, R.; Albrecht , M. W.; Amstislavskiy, V.; Borodina, T. A.; Dahl, A.; Davydov, A. et al.; Herwig, R.; Marquardt, P.; Mertes, F.; Nietfeld, W.; Parkhomchuk, D.; Soldatov, A.; Timmermann, B.; Tolzmann, M.; Lehrach, H.: A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes. Science 335 (6070), pp. 823 - 828 (2012)

Dreher, F.; Kamburov, A.; Herwig, R.: Construction of a pig physical interactome using sequence homology and a comprehensive reference human interactome. Evolutionary Bioinformatics 8, pp. 119 - 126 (2012)

Meinel, T.; Schweiger, M. R.; Ludewig, A. H.; Chenna, R.; Krobitsch, S.; Herwig, R.: Ortho2ExpressMatrix--a web server that interprets cross-species gene expression data by gene family information. BMC Genomics 12, 12:483 (2011)

Donnarumma, F.; Schober, M.; Greilberger, J.; Matzi, V.; Lindenmann, J.; Maier, A.; Herwig, R.; Wintersteiger, R.: Method development and validation for the analysis of a new anti-cancer infusion solution via HPLC. Journal of Separation Science 34 (2), pp. 135 - 41 (2011)

Chavez, L.; Bais, A. S.; Vingron, M.; Lehrach, H.; Adjaye, J.; Herwig, R.: In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach. BMC Genomics 10, p. 314 - 314 (2009)

Hache, H.; Lehrach, H.; Herwig, R.: Reverse Engineering of Gene Regulatory Networks: A Comparative Study. EURASIP Journal on Bioinformatics and Systems Biology 2009, ID 617281 (2009)

Hache, H.; Wierling, C.; Lehrach, H.; Herwig, R.: GeNGe: systematic generation of gene regulatory networks. Bioinformatics. Bioinformatics 25 (9), pp. 1205 - 1207 (2009)

Kamburov, A.; Wierling, C.; Lehrach, H.; Herwig, R.: ConsensusPathDB—a database for integrating human functional interaction networks. Nucleic Acids Research 37 (Database issue), pp. D623 - D628 (2008)

Rasche, A.; Al-Hasani, H.; Herwig, R.: Meta-analysis approach identifies candidate genes and associated molecular networks for Type-2 Diabetes Mellitus. BMC Genomics 9, p. 9:310 - 9:310 (2008)

Adjaye, J.; Herwig, R.; Brink, T. C.; Herrmann, D.; Greber, B.; Sudheer, S.; Groth, D.; Carnwath, J. W.; Lehrach, H.; Niermann, H.: Conserved molecular portraits of bovine and human blastocysts as a consequence of the transition from maternal to embryonic control of gene expression. Physiological Genomics 31 (2), pp. 315 - 327 (2007)

Wierling, C.; Herwig, R.; Lehrach, H.: Resources, standards and tools for systems biology. Briefings in Functional Genomics and Proteomics 6 (3), pp. 240 - 251 (2007)

Poustka, A. J.; Kühn, A.; Groth, D.; Weise, V.; Yaguchi, S.; Burke, R. D.; Herwig, R.; Lehrach, H.; Panopoulou, G.: A global view of gene expression in lithium and zinc treated sea urchin embryos: new components of gene regulatory networks. Genome Biology 8 (5), p. R85 - R85 (2007)

Sultan, M.; Piccini, I.; Balzereit, D.; Herwig, R.; Saran, N. G.; Lehrach, H.; Reeves, R. H.; Yaspo, M.-L.: Gene expression variation in Down's syndrome mice allows prioritization of candidate genes. Genome Biology 8 (5), p. R91 - R91 (2007)

Bennett, J. D.; Joubin, K.; Cheng, S.; Aanstad, P.; Herwig, R.; Clark, M.; Lehrach, H.; Schier, A. F.: Nodal signaling activates differentiation genes during zebrafish gastrulation. Developmental Biology 304 (2), pp. 525 - 540 (2007)

Liu, J.-P.; Drungowski, M.; Nyarsik, L.; Schwartz, R.; Lehrach, H.; Herwig, R.; Janitz, M.: Oligonucleotide fingerprinting of arrayed genomic DNA sequences using LNA-modified hybridization probes. Combinatorial Chemistry & High Throughput Screening 10 (4), pp. 269 - 276 (2007)

Jann, O. C.; Aerts, J.; Jones, M.; Hastings, N.; Law, A.; McKay, S.; Marques, E.; Prasad, A.; Yu, J.; Moore, S. S. et al.; Floriot, S.; Mahé, M.-F.; Eggen, A.; Silveri, L.; Negrini, R.; Milanesi, E.; Ajmone-Marsan, P.; Valentini, A.; Marchitelli, C.; Savarese, M. C.; Janitz, M.; Herwig, R.; Hennig, S.; Gorni, C.; Connor, E. E.; Sonstegard, T. S.; Smith, T.; Drögemüller, C.; Williams, J. L.: A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. BMC Genomics 7, p. 283 - 283 (2006)

Assmus, H. E.; Herwig, R.; Cho, K.-H.; Wolkemhauer, O.: Dynamics of biological systems: role of systems biology in medical research. Expert Review of Molecular Diagnostics 6 (6), pp. 891 - 902 (2006)

Babaie, Y.; Herwig, R.; Greber, B.; Brink, T. C.; Wruck, W.; Groth, D.; Lehrach, H.; Burdon, T.; Adjaye, J.: Analysis of Oct4-dependent transcriptional networks regulating self-renewal and pluripotency in human embryonic stem cells. Stem Cells Stem Cells Express, p. Epub - Epub (2006)

Makrantonaki, E.; Adjaye, J.; Herwig, R.; Brink, T. C.; Groth, D.; Hultschig, C.; Lehrach, H.; Zouboulis, C. C.: Age-specific hormonal decline is accompanied by transcriptional changes in human sebocytes in vitro. Aging Cell 5 (4), pp. 331 - 344 (2006)