Publications of Ralf Herwig

Lienhard, M.; Grimm, C.; Morkel, M.; Herwig, R.; Chavez, L.: MEDIPS: genome wide differential coverage analysis of sequencing data derived from DNA enrichment experiments. Bioinformatics 30 (2), pp. 284 - 286 (2014)

Lienhard, M.; Grimm, C.; Morkel, M.; Herwig, R.; Chavez, L.: MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments. Bioinformatics 30 (2), pp. 284 - 286 (2014)

Rabhi, I.; Rabhi, S.; Ben-Othman, R.; Aniba, M. R.; Sysco Consortium; Herwig, R.; Trentin, B.; Piquemal, D.; Regnault, B.; Guizani-Tabbane, L.: Comparative analysis of resistant and susceptible macrophage gene expression response to Leishmania major parasite. BMC Genomics 14, 14:723 (2013)

Lemaire, J.; Mkannez, G.; Guerfali, F. Z.; Gustin, C.; Attia, H.; Sghaier, R. M.; Sysco-Consortium; Herwig, R.; Dellagi, K.; Laouini, D. et al.; Renard, P.: MicroRNA expression profile in human macrophages in response to Leishmania major infection. PLoS Neglected Tropical Diseases 7 (10), e2478 (2013)

Jankowski, V.; Schulz, A.; Kretschmer, A.; Mischak, H.; Boehringer, F.; van der Giet, M.; Janke, D.; Schuchardt, M.; Herwig, R.; Zidek, W. et al.; Jankowski, J.: The enzymatic activity of the VEGFR2-receptor for the biosynthesis of dinucleoside polyphosphates. Journal of Molecular Medicine 91 (9), pp. 1095 - 1107 (2013)

Vilardell, M.; Civit, S.; Herwig, R.: An integrative computational analysis provides evidence for FBN1-associated network de-regulation in trisomy 21. Biology Open 2 (8), pp. 771 - 778 (2013)

Grimm, C.; Chavez, L.; Vilardell, M.; Farrall, A.; Tierling, S.; Böhm, J. W.; Grote, P.; Lienhard, M.; Dietrich, J.; Timmermann, B. et al.; Walter, J.; Schweiger, M. R.; Lehrach, H.; Herwig, R.; Herrmann, B. G.; Morkel, M.: DNA–Methylome Analysis of Mouse Intestinal Adenoma Identifies a Tumour-Specific Signature That Is Partly Conserved in Human Colon Cancer. PLoS Genetics 9 (2), p. e1003250 - e1003250 (2013)

Suter, B.; Fontaine, J. F.; Yildirimman, R.; Rasko, T.; Schaefer, M. H.; Rasche, A.; Porras, P.; Vazquez-Alvarez, B. M.; Russ, J.; Rau, K. et al.; Foulle, R.; Zenkner, M.; Saar, K.; Herwig, R.; Andrade-Navarro, M. A.; Wanker, E. E.: Development and application of a DNA microarray-based yeast two-hybrid system. Nucleic Acids Research (London) 41 (3), pp. 1496 - 1507 (2013)

Doktorova, T. Y.; Yildirimman, R.; Vinken, M.; Vilardell, M.; Vanhaecke, T.; Gmuender, H.; Bort, R.; Brolen, G.; Holmgren, G.; Li, R. et al.; Chesne, C.; van Delft, J.; Kleinjans, J.; Castell, J.; Bjorquist, P.; Herwig, R.; Rogiers, V.: Transcriptomic responses generated by hepatocarcinogens in a battery of liver-based in vitro models. Carcinogenesis 34 (6), pp. 1393 - 402 (2013)

Fogeron, M.-L.; Müller, H.; Schade, S.; Dreher, F.; Lehmann, V.; Kühnel, A.; Scholz, A. K.; Kashofer, K.; Zerck, A.; Fauler, B. et al.; Lurz, R.; Herwig, R.; Zatloukal, K.; Lehrach, H.; Gobom, J.; Nordhoff, E.; Lange, B.: LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells. Nature Communications 4, p. 4:1531 - 4:1531 (2013)

Jankowski, V.; Schulz, A.; Kretschmer, A.; Mischak, H.; Boehringer, F.; van der Giet, M.; Janke, D.; Schuchardt, M.; Herwig, R.; Zidek, W. et al.; Jankowski, J.: The enzymatic activity of the VEGFR2 receptor for the biosynthesis of dinucleoside polyphosphates. Journal of Molecular Medicine-JMM 91 (9), pp. 1095 - 107 (2013)

Kamburov, A.; Stelzl, U.; Lehrach, H.; Herwig, R.: The ConsensusPathDB interaction database: 2013 update. Nucleic Acids Research (London) 41 (Database issue), pp. D793 - 800 (2013)

Vilardell, M.; Civit, S.; Herwig, R.: An integrative computational analysis provides evidence for FBN1-associated network deregulation in trisomy 21. Biol Open 2 (8), pp. 771 - 8 (2013)

Xue, Y.; Chen, Y.; Ayub, Q.; Huang, N.; Ball, E. V.; Mort, M.; Phillips, A. D.; Shaw, K.; Stenson, P. D.; Cooper, D. N. et al.; Tyler-Smith, C.; The 1000 Genomes Project Consortium; Timmermann, B.; Lehrach, H.; Herwig, R.: Deleterious- and Disease-Allele Prevalence in Healthy Individuals: Insights from Current Predictions, Mutation Databases, and Population-Scale Resequencing. The American Journal of Human Genetics 91 (6), pp. 1022 - 1031 (2012)

van Delft, J.; Gaj, S.; Lienhard, M.; Albrecht, M.; Kirpiy, A.; Brauers, K.; Claessen, S.; Lizarraga, D.; Lehrach, H.; Herwig, R. et al.; Kleinjans, J.: RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene. Toxicological Sciences 130 (2), pp. 427 - 439 (2012)

Abecasis, G. R.; Auton, A.; Brooks, L. D.; DePristo, M. A.; Durbin, R. M.; Handsaker, R. E.; Kang, H. M.; Marth, G. T.; McVean, G. A.; The 1000 Genomes Project Consortium et al.; Sudbrak, R.; Albrecht, M.; Amstislavskiy, V.; Borodina, T. A.; Davydov, A.; Herwig, R.; Lienhard, M.; Mertes, F.; Sultan, M.; Timmermann, B.; Yaspo, M. L.; Lehrach, H.: An integrated map of genetic variation from 1,092 human genomes. Nature 491 (7422), pp. 56 - 65 (2012)

Kamburov, A.; Grossmann, A.; Herwig, R.; Stelzl, U.: Cluster-based assessment of protein-protein interaction confidence. BMC Bioinformatics, p. 13:262 - 13:262 (2012)

Wierling, C.; Kühn, A.; Hache, H.; Daskalaki, A.; Maschke-Dutz, E.; Peycheva, S.; Li, J.; Herwig, R.; Lehrach, H.: Prediction in the face of uncertainty: a Monte Carlo-based approach for systems biology of cancer treatment. Mutation Research-Genetic Toxixology and Environmental Mutagenesis 746 (2), pp. 163 - 170 (2012)

Kamburov, A.; Stelzl, U.; Herwig, R.: IntScore: a web tool for confidence scoring of biological interactions. Nucleic Acids Research (London) 40 (Web Server issue), pp. W140 - W146 (2012)

Dreher, F.; Kreitler, T.; Hardt, C.; Kamburov, A.; Yildirimman, R.; Schellander, K.; Lehrach, H.; Lange, B. M. H.; Herwig, R.: DIPSBC--data integration platform for systems biology collaborations. BMC Bioinformatics 13, 13:85 (2012)