Publications

Ganbari, M.; Lasserre, J.; Vingron, M.: Reconstruction of gene networks using prior knowledge. BMC Systems Biology 9, 9:84 (2015)

Eduati, F.; Mangravite, L. M.; Wang, T.; Tang, H.; Bare, J. C.; Huang, R.; Norman, T.; Kellen, M.; Menden, M. P.; Yang, J. et al.; Zhan, X.; Zhong, R.; Xiao, G.; Xia, M.; Abdo, N.; Kosyk, O.; Collaboration, N.-N.-U. D. T.; van Bömmel, A.; Caffrey, B.; Heinig, M.; Huska, M.; Mammana, A.; Perner, J.; Vingron, M.; Friend, S.; Dearry, A.; Simeonov, A.; Tice, R. R.; Rusyn, I.; Wright, F. A.; Stolovitzky, G.; Xie, Y.; Saez-Rodriguez, J.: Prediction of human population responses to toxic compounds by a collaborative competition. Nat Biotechnol 33 (9), pp. 933 - 940 (2015)

George, J.; Lim, J. S.; Jang, S. J.; Cun, Y.; Ozretic, L.; Kong, G.; Leenders, F.; Lu, X.; Fernandez-Cuesta, L.; Bosco, G. et al.; Müller, C.; Dahmen, I.; Jahchan, N. S.; Park, K. S.; Yang, D.; Karnezis, A. N.; Vaka, D.; Torres, A.; Wang, M. S.; Korbel, J. O.; Menon, R.; Chun, S. M.; Kim, D.; Wilkerson, M.; Hayes, N.; Engelmann, D.; Putzer, B.; Bos, M.; Michels, S.; Vlasic, I.; Seidel, D.; Pinther, B.; Schaub, P.; Becker, C.; Altmuller, J.; Yokota, J.; Kohno, T.; Iwakawa, R.; Tsuta, K.; Noguchi, M.; Muley, T.; Hoffmann, H.; Schnabel, P. A.; Petersen, I.; Chen, Y.; Soltermann, A.; Tischler, V.; Choi, C. M.; Kim, Y. H.; Massion, P. P.; Zou, Y.; Jovanovic, D.; Kontic, M.; Wright, G. M.; Russell, P. A.; Solomon, B.; Koch, I.; Lindner, M.; Muscarella, L. A.; la Torre, A.; Field, J. K.; Jakopovic, M.; Knezevic, J.; Castanos-Velez, E.; Roz, L.; Pastorino, U.; Brustugun, O. T.; Lund-Iversen, M.; Thunnissen, E.; Köhler, J.; Schuler, M.; Botling, J.; Sandelin, M.; Sanchez-Cespedes, M.; Salvesen, H. B.; Achter, V.; Lang, U.; Bogus, M.; Schneider, P. M.; Zander, T.; Ansen, S.; Hallek, M.; Wolf, J.; Vingron, M.; Yatabe, Y.; Travis, W. D.; Nurnberg, P.; Reinhardt, C.; Perner, S.; Heukamp, L.; Büttner, R.; Haas, S. A.; Brambilla, E.; Peifer, M.; Sage, J.; Thomas, R. K.: Comprehensive genomic profiles of small cell lung cancer. Nature 524 (7563), pp. 47 - 53 (2015)

Emmerich, D.; Zemojtel, T.; Hecht, J.; Krawitz, P.; Spielmann, M.; Kühnisch, J.; Kobus, K.; Oßwald, M.; Heinrich, V.; Berlien, P. et al.; Müller, U.; Mautner, V.-F.; Wimmer, K.; Robinson, P. N.; Vingron, M.; Tinschert, S.; Mundlos, S.; Kolanczyk, M.: Somatic neurofibromatosis type 1 (NF1) inactivation events in cutaneous neurofibromas of a single NF1 patient. European journal of human genetics 23 (6), pp. 1870 - 1873 (2015)

Starick, S. R.; Ibn-Salem, J.; Jurk, M.; Hernandez, C.; Love, M. I.; Chung, H.-R.; Vingron, M.; Thomas-Chollier, M.; Meijsing, S. H.: ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors. Genome Res 25 (6), pp. 825 - 835 (2015)

Schafer, S.; Adami, E.; Heinig, M.; Rodrigues, K. E.; Kreuchwig, F.; Silhavy, J.; van Heesch, S.; Simaite, D.; Rajewsky, N.; Cuppen, E. et al.; Pravenec, M.; Vingron, M.; Cook, S. A.; Hubner, N.: Translational regulation shapes the molecular landscape of complex disease phenotypes. Nat Commun 6, 6:7200 (2015)

Fernandez-Cuesta, L.; Sun, R.; Menon, R.; George, J.; Lorenz, S.; Meza-Zepeda, L. A.; Peifer, M.; Plenker, D.; Heuckmann, J. M.; Leenders, F. et al.; Zander, T.; Dahmen, I.; Koker, M.; Schöttle, J.; Ullrich, R. T.; Altmüller, J.; Becker, C.; Nürnberg, P.; Seidel, H.; Böhm, D.; Göke, F.; Ansen, S.; Russell, P. A.; Wright, G. M.; Wainer, Z.; Solomon, B.; Petersen, I.; Clement, J. H.; Sänger, J.; Brustugun, O. T.; Helland, A.; Solberg, S.; Lund-Iversen, M.; Büttner, R.; Wolf, J.; Brambilla, E.; Vingron, M.; Perner, S.; Haas, S. A.; Thomas, R. K.: Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data. Genome Biology: Biology for the Post-Genomic Era 16, 16:7 (2015)

Heinig, M.; Colome-Tatche, M.; Taudt, A.; Rintisch, C.; Schafer, S.; Pravenec, M.; Hubner, N.; Vingron, M.; Johannes, F.: histoneHMM: Differential analysis of histone modifications with broad genomic footprints. BMC Bioinformatics 16, 16:60 (2015)

Schöpflin, R.; Andrey, G.; Heinrich, V.; Franke, M.; Ibrahim, D.; Paliou, C.; Mundlos, S.; Vingron, M.: Identification of potential regulatory elements in Capture-C interaction profiles. In: Genome Regulation in 3D. Genome Regulation in 3D, Rehovot, Israel, June 28, 2015 - June 30, 2015. Weizmann Institute, Rehovot, Israel (2015)

Schöpflin, R.; Vingron, M.: Identification of cis-regulatory elements from chromosome conformation capture data. In: 19th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2015). 19th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2015), Warsaw, Poland, April 12, 2015 - April 15, 2015. (2015)

Moeinzadeh, M.; Yang, J.; Vingron, M.: Haplotype reconstruction for polyploid organisms. BREW 2015: Bioinformatics Research and Education Workshop, University of Tartu, Tartu, Estonia (2015)

Moeinzadeh, M.; Yang, J.; Vingron, M.: Haplotype reconstruction for sweet potato (Ipomoea Batatas [L.] Lam). 19. International Conference on Research in Computational Molecular Biology (RECOMB 2015), Warsaw (2015)