Publications

Szczurek, E.; Misra, N.; Vingron, M.: Synthetic sickness or lethality points at candidate combination therapy targets in glioblastoma. International Journal of Cancer 133 (9), pp. 2123 - 2132 (2013)

Thomas-Chollier, M.; Watson, L. C.; Cooper, S. B.; Pufall, M. A.; Liu, J. S.; Borzym, K.; Vingron, M.; Yamamoto, K. R.; Meijsing, S. H.: A naturally occuring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms. Proceedings of the National Academy of Sciences of the United States of America 110 (44), pp. 17826 - 17831 (2013)

Mammana, A.; Vingron, M.; Chung, H.-R.: Inferring nucleosome positions with their histone mark annotation from ChIP data. Bioinformatics 29 (20), pp. 2547 - 2554 (2013)

Marsico, A.; Huska, M.; Lasserre, J.; Hu, H.; Vucicevic, D.; Musahl, A.; Ørom, U. A.; Vingron, M.: PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs. Genome Biology 14 (8), p. R84 - R84 (2013)

Göke, J.; Chan, Y. S.; Yan, J. L.; Vingron, M.; Ng, H. H.: Genome-wide Kinase-Chromatin Interactions Reveal the Regulatory Network of ERK Signaling in Human Embryonic Stem Cells. Molecular Cell 50 (6), pp. 844 - 855 (2013)

Feldmann, R.; Fischer, C.; Kodelja, V.; Behrens, S.; Haas, S.; Vingron, M.; Timmermann, B.; Geikowski, A.; Sauer, S.: Genome-wide analysis of LXRalpha activation reveals new transcriptional networks in human atherosclerotic foam cells. Nucleic Acids Research (London) 41 (6), pp. 3518 - 3531 (2013)

Feldmann, R.; Fischer, C.; Kodelja, V.; Behrens, S.; Haas, S.; Vingron, M.; Timmermann, B.; Geikowski, A.; Sauer, S.: Genome-wide analysis of LXRα activation reveals new transcriptional networks in human atherosclerotic foam cells. Nucleic Acids Research (London) 41 (6), pp. 3518 - 3531 (2013)

Weirauch, M. T.; Cote, A.; Norel, R.; Annala, M.; Zhao, Y.; Riley, T. R.; Saez-Rodriguez, J.; Cokelaer, T.; Vedenko, A.; Talukder, S. et al.; Consortium, D.; Agius, P.; Arvey, A.; Bucher, P.; Callan, C. G.,. J.; Chang, C. W.; Chen, C. Y.; Chen, Y. S.; Chu, Y. W.; Grau, J.; Grosse, I.; Jagannathan, V.; Keilwagen, J.; Kielbasa, S. M.; Kinney, J. B.; Klein, H.; Kursa, M. B.; Lahdesmaki, H.; Laurila, K.; Lei, C.; Leslie, C.; Linhart, C.; Murugan, A.; Mysickova, A.; Noble, W. S.; Nykter, M.; Orenstein, Y.; Posch, S.; Ruan, J.; Rudnicki, W. R.; Schmid, C. D.; Shamir, R.; Sung, W. K.; Vingron, M.; Zhang, Z.; Bussemaker, H. J.; Morris, Q. D.; Bulyk, M. L.; Stolovitzky, G.; Hughes, T. R.: Evaluation of methods for modeling transcription factor sequence specificity. Nature biotechnology 31 (2), pp. 126 - 34 (2013)

Lasserre, J.; Chung, H.-R.; Vingron, M.: Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks. PLoS Computational Biology 9 (9), p. e1003168 - e1003168 (2013)