Publications

The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (11)

Journal Article

Odoardi, F.; Sie, C.; Streyl, K.; Ulaganathan, V. K.; Schlaeger, C.; Lodygin, D.; Heckelsmiller, K.; Nietfeld, W.; Ellwart, J.; Klinkert, W. E. F. et al.; Lottaz, C.; Nosov, M.; Brinkmann, V.; Spang, R.; Lehrach, H.; Vingron, M.; Wekerle, H.; Fluegel-Koch, C.; Fluegel, A.: T cells become licensed in the lung to enter the central nervous system. Nature 488 (7413), pp. 675 - 679 (2012)

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Ni, S.; Vingron, M.: R2KS: a novel measure for comparing gene expression based on ranked gene lists. Journal of Computational Biology 19 (6), pp. 766 - 775 (2012)

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Schulz, M. H.; Zerbino, D. R.; Vingron, M.; Birney, E.: Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics 28 (8), pp. 1086 - 92 (2012)

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Zemojtel, T.; Vingron, M.: p53 binding sites in transposons. Frontiers in Genetics 3, 40 (2012)

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Lasserre, J.; Arnold, S.; Vingron, M.; Reinke, P.; Hinrichs, C.: Predicting the outcome of renal transplantation. Journal of the American Medical Informatics Association 19 (2), pp. 255 - 262 (2012)

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Mysickova, A.; Vingron, M.: Detection of interacting transcription factors in human tissues using predicted DNA binding affinity. BMC Genomics 13 Suppl 1, p. S2 - S2 (2012)

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Adams, D.; Altucci, L.; Antonarakis, S. E.; Ballesteros, J.; Beck, S.; Bird, A.; Bock, C.; Boehm, B.; Campo, E.; Caricasole, A. et al.; Dahl, F.; Dermitzakis, E. T.; Enver, T.; Esteller, M.; Estivill, X.; Ferguson-Smith, A.; Fitzgibbon, J.; Flicek, P.; Giehl, C.; Graf, T.; Grosveld, F.; Guigo, R.; Gut, I.; Helin, K.; Jarvius, J.; Kuppers, R.; Lehrach, H.; Lengauer, T.; Lernmark, A.; Leslie, D.; Loeffler, M.; Macintyre, E.; Mai, A.; Martens, J. H.; Minucci, S.; Ouwehand, W. H.; Pelicci, P. G.; Pendeville, H.; Porse, B.; Rakyan, V.; Reik, W.; Schrappe, M.; Schubeler, D.; Seifert, M.; Siebert, R.; Simmons, D.; Soranzo, N.; Spicuglia, S.; Stratton, M.; Stunnenberg, H. G.; Tanay, A.; Torrents, D.; Valencia, A.; Vellenga, E.; Vingron, M.; Walter, J.; Willcocks, S.: BLUEPRINT to decode the epigenetic signature written in blood. Nature biotechnology 30 (3), pp. 224 - 226 (2012)

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Emde, A. K.; Schulz, M. H.; Weese, D.; Sun, R.; Vingron, M.; Kalscheuer, V. M.; Haas, S.; Reinert, K.: Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS. Bioinformatics 28 (5), pp. 619 - 27 (2012)

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Göke, J.; Schulz, M. H.; Lasserre, J.; Vingron, M.: Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts. Bioinformatics 28 (5), pp. 656 - 63 (2012)

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Heise, F.; Chung, H.-R.; Weber, J. M.; Xu, Z.; Klein-Hitpass, L.; Steinmetz, L. M.; Vingron, M.; Ehrenhofer-Murray, A. E.: Genome-wide H4 K16 acetylation by SAS-I is deposited independently of transcription and histone exchange. Nucleic Acids Research (London) 40 (1), pp. 65 - 74 (2012)

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Sun, R.; Love, M.; Zemojtel, T.; Emde, A.-K.; Chung, H.-R.; Vingron, M.; Haas, S.: Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads. Bioinformatics 28 (7), pp. 1024 - 1025 (2012)

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