Publications

Pape, U. J.; Rahmann, S.; Sun, F.; Vingron, M.: Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology 15 (6), pp. 547 - 564 (2008)

Hufton, A. L.; Groth, D.; Vingron, M.; Lehrach, H.; Poustka, A. J.; Panopoulou, G.: Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Research 18 (10), pp. 1582 - 1591 (2008)

Kielbasa, S. M.; Vingron, M.: Transcriptional Autoregulatory Loops Are Highly Conserved in Vertebrate Evolution. PLoS One 3 (9), p. e3210 - e3210 (2008)

Sultan, M.; Schulz, M. H.; Hugues, R.; Magen, A.; Klingenhoff, A.; Scherf, M.; Seifert, M.; Borodina, T.; Soldatov, A.; i Parkhomchuk, D. et al.; Schmidt, D.; O'Keeffe, S.; Haas, S.; Vingron, M.; Lehrach, H.; Yaspo, M.-L.: A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome. Science 321 (5891), pp. 956 - 960 (2008)

Winter, J.; Roepcke, S.; Krause, S.; Müller, E.-C.; Otto, A.; Vingron, M.; Schweiger, S.: Comparative 3’UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines. PLoS One 3 (7), p. e2780 - e2780 (2008)

Kaluza, P.; Vingron, M.; Mikhailov, A. S.: Self-correcting networks: Function, robustness, and motif distributions in biological signal processing. Chaos: an Interdisciplinary Journal of Nonlinear Sciencc 18 (2), p. 026113 - 026113 (2008)

Toenjes, M.; Schueler, M.; Hammer, S.; Pape, U. J.; Fischer, J. J.; Felix Berger, F.; Vingron, M.; Sperling, S.: Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes. Molecular BioSystems: A New High Quality Chemical Biology Journal with A Particular Focus on the Interface between Chemistry and the -Omic Sciences and Systems Biology 4 (6), pp. 589 - 598 (2008)

Manke, T.; Roider, H. G.; Vingron, M.: Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions. PLoS Computational Biology 4 (3), p. e1000039 - e1000039 (2008)

Chen, W.; Kalscheuer, V.; Tzschach, A.; Menzel, C.; Ullmann, R.; Schulz, M. H.; Erdogan, F.; Na, L.; Kijas, Z.; Arkesteijn, G. et al.; Pajares, I. L.; Goetz-Sothmann, M.; Heinrich, U.; Rost, I.; Dufke, A.; Grasshoff, U.; Glaeser, B.; Vingron, M.; Ropers, H. H.: Mapping translocation breakpoints by next-generation sequencing. Genome Research 18 (7), pp. 1143 - 1149 (2008)

Giegerich, R.; Brazma, A.; Ukkonen, E.; Vingron, M.; Jonassen,, I.: The BREW workshop series: a stimulating experience in PhD education. Briefings in Bioinformatics 9 (3), pp. 250 - 253 (2008)

Pape, U. J.; Rahmann, S.; Vingron, M.: Natural similarity measures between position frequency matrices with an application to clustering. Bioinformatics 24 (3), pp. 350 - 357 (2008)

Schulz, M. H.; Weese, D.; Rausch, T.; Döring, A.; Reinert, K.; Vingron, M.: Fast and adaptive variable order Markov chain construction. In: Algorithms in Bioinformatics, pp. 306 - 317 (Eds. Crandall, K. A.; Lagergren, J.). Springer, Berlin / Heidelberg (2008)

Coulson, R.; Manke, T.; Palin, K.; Roider, H.; Sand, O.; van Helden, J.; Ukkonen, E.; Vingron, M.; Brazma, A.: From gene expression profiling to gene regulation. In: Modern Genome Annotation, pp. 91 - 102 (Eds. Frishman, D.; Valencia, A.). Springer, Wien (2008)

Manke, T.; Roider, H. G.; Vingron, M.: A biophysical approach to large-scale protein-DNA binding data. In: Modern Genome Annotation: The Biosapiens Network, pp. 91 - 102 (Eds. Frishman, D.; Valencia, A.). Springer, New York (2008)

Pape, U. J.; Vingron, M.: Statistics for Co-Occurrence of DNA Motifs. 2008 International Workshop on Applied Probability, Université de Technologie de Compiègne, France, July 07, 2008 - July 10, 2008. (2008)

Pape, U.; Vingron, M.: Statistical detection of co-operative transcription factors with similarity adjustment. In: Proceedings of the German Conference on Bioinformatics, GCB, pp. 96 - 105 (Ed. Andreas Beyer, M. S.). German Conference on Bioinformatics (GCB), Dresden, September 09, 2008 - September 12, 2008. GI (2008)