Current Position

Freie Universität Berlin

Computer Science

Takustr. 9, Berlin 14195, Germany

www.mi.fu-berlin.de/en/inf/groups/abi/members/Scientific_Staff/andreotti.html

Education

  • 2002-2005: B.Sc. in Bioinformatics at Free University Berlin (Germany)
  • 2005-2007: M.Sc. in Bioinformatics at Free University Berlin (Germany)
  • 2008-2014: PhD studies at the IMPRS-CBSC supervised by Prof. Dr. Knut Reinert

Dissertation

Scientific Interests

  • Algorithm Development for Proteomics
  • Mathematical Programming

Publications from time as IMPRS fellow

  • S Andreotti, K Reinert, S Canzar (2013). The duplication-loss small phylogeny problem: from cherries to trees. J Comput Biol., 20 (9): 643-59
  • C Bielow, S Aiche, S Andreotti, K Reinert (2011). MSSimulator: Simulation of mass spectrometry data. J Proteome Res., 10 (7): 2922-9
  • S Andreotti, GW Klau, K Reinert (2011). Antilope - a Lagrangian relaxation approach to the de novo peptide sequencing problem. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9 (2):385-94
  • Peptide Sequencing Using Mathematical Programming. M.Sc. thesis at the Free University Berlin, 2007
  • An Integer Linear Programming Approach for the Protein Threading Problem. B.Sc. thesis at the Free University Berlin, 2005
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