Current Position
Freie Universität Berlin
Computer Science
Takustr. 9, Berlin 14195, Germany
www.mi.fu-berlin.de/en/inf/groups/abi/members/Scientific_Staff/andreotti.html
Education
- 2002-2005: B.Sc. in Bioinformatics at Free University Berlin (Germany)
- 2005-2007: M.Sc. in Bioinformatics at Free University Berlin (Germany)
- 2008-2014: PhD studies at the IMPRS-CBSC supervised by Prof. Dr. Knut Reinert
Dissertation
- Submitted September 2014
- Linear Programming and Integer Linear Programming in Bioinformatics
Scientific Interests
- Algorithm Development for Proteomics
- Mathematical Programming
Publications from time as IMPRS fellow
- S Andreotti, K Reinert, S Canzar (2013). The duplication-loss small phylogeny problem: from cherries to trees. J Comput Biol., 20 (9): 643-59
- C Bielow, S Aiche, S Andreotti, K Reinert (2011). MSSimulator: Simulation of mass spectrometry data. J Proteome Res., 10 (7): 2922-9
- S Andreotti, GW Klau, K Reinert (2011). Antilope - a Lagrangian relaxation approach to the de novo peptide sequencing problem. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9 (2):385-94
- Peptide Sequencing Using Mathematical Programming. M.Sc. thesis at the Free University Berlin, 2007
- An Integer Linear Programming Approach for the Protein Threading Problem. B.Sc. thesis at the Free University Berlin, 2005