Current position:
Postdoc
Max Planck Institute for Molecular Genetics
Bioinformatics
Ihnestr. 63-73 Berlin
14195 Germany
www.linkedin.com/pub/alena-van-b%C3%B6mmel/ba/b94/aa4
Education
- 2002: Prediploma in Mathematics at the Charles University of Prague (Czech Republic)
- 2005: B.Sc. in Statistics at Humboldt-Universität zu Berlin (Germany)
- 2007: M.Sc. in Statistics at Humboldt-Universität zu Berlin (Germany)
- 2008-09: Research and Teaching Assistant at the Chair of Statistics, Humboldt-Universität zu Berlin (Germany)
- Oct 2009 - Jun 2014: PhD studies at the IMPRS-CBSC supervised by Prof. Dr. Martin Vingron
Dissertation
- Submitted July 2014
- Prediction of transcription factor co-occurrence using rank based statistics
Scientific Interests
- Co-occurrence of Transcription Factors
- Rank Based Statistics
- Tissue-specific Regulatory Elements
- Detection of CNVs in NGS Data
- Applications of Multivariate Statistics in Natural Science
Teaching
- WS 2016/17: Algorithmische Bioinformatik
- WS 2015/16: Statistics
- SS 2015: Softwarepraktikum Functional genomics with R
- SS 2014: Softwarepraktikum Functional genomics with R
- WS 2013/14: Statistics
- SS 2013: Softwarepraktikum Functional genomics with R
- WS 2012/13: Algorithmische Bioinformatik
Publications from time as IMPRS fellow
- H Hu et al. (2015). X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes. Mol Psychiatry, [epub ahead of print]
- A van Bömmel et al. (2014) Risk patterns and correlated brain activities. Multidimensional statistical analysis of FMRI data in economic decision making study. Psychometrika, 79 (3): 489-514
- F van Bömmel et al. (2014) Serum hepatitis B virus RNA levels as an early predictor of HBeAg seroconversion during treatment with polymerase inhibitors. Hepatology, 61 (1): 66-76
- MT Weirauch et al. (2013) Evaluations of methods for modeling transcription factor sequence specificity. Nat Biotechnol., 31 (2):126-34
- MG Schimek, A Myšičková, E Budinská (2012). An inference and integration approach for the consolidation of ranked lists. Communications in Statistics - Simulation and Computation, 41 (7): 1152-1166
- A Myšičková, M Vingron (2012). Detection of interacting transcription factors in human tissues using predicted DNA binding affinity. BMC Genomics, 13 Suppl 1: S2
- MI Love, A Myšičková, R Sun, V Kalscheuer, M Vingron, SA Haas (2011). Modeling read counts for CNV detection in exome sequencing data. Statistical Applications in Genetics and Molecular Biology, 10 (1): 52
- W Härdle, A Myšičková (2009). "Numerics of Implied Binomial Trees" in W Härdle, N Hautsch and L Overbeck. Applied Quantitative Finance, 2nd edition, Springer-Verlag, Berlin, Heidelberg
- A Myšičková, A Gansel (2007). Die pauschaldotierte Unterstützungskasse - Pro und Contra. Betriebliche Altersversorgung 3/2007: 229-230.
- M.Sc. thesis at the Humboldt-Universität zu Berlin, 2007. "Stochastische Bevölkerungsvorausberechnung für Deutschland und ihre Bedeutung für ein zukünftiges Rentenmodell"
- B.Sc. thesis at the Humboldt-Universität zu Berlin, 2005. "Modellierung der Salmonella-Prävalenz bei Hähnchen"