Prof. Dr. Annalisa Marsico - RNA Bioinformatics

  • 2003 - Diploma in Physics, University of Bari, Italy.
  • 2005 - M.Sc. in Bioinformatics, University of Siena and University of Bari, Italy.
  • 2009 - Doctorate in Bioinformatics, TU Dresden, Germany.
  • 2009-2010 - Postdoc at TU Dresden, Germany
  • 2010-2014 - Postdoctoral research associate at MPI for Molecular Genetics, Berlin, Germany.
  • since 2014 - Junior Professor for High-Throughput Genomics at Freie Universität Berlin, Germany

Research interests

  • Developing data mining and machine learning approaches to unravel and explain different aspects of post-transcriptional gene regulation.
  • Integration of high-throughput genomic data into coherent models to describe significant aspects of non-coding RNA-mediated regulation
  • Development of bioinformatics methods for RNA structure and protein binding site prediction

Recent Publications

  • AS Musahl et al. (2015)
    A long non-coding RNA links calreticulin-mediated immunogenic cell removal to RB1 transcription.
    Oncogene34 (39): 5046-54
  • T Conrad*, A Marsico*, M Gehre, UA Orom (2014)
    Microprocessor Activity Controls Differential miRNA Biogenesis in Vivo.
    Cell Rep.9 (2): 542-54
  • A Marsico et al. (2013)
    PROmiRNA: a new miRNA promoter prediction method uncovers the complex regulation of intronic miRNAs.
    Genome Biol., 14 (8): R84
  • S Prykhozhij, A Marsico and S Meijsing (2013)
    Zebrafish Expression Ontology of Gene Sets (ZEOGS): a tool to analyze enrichment of zebrafish anatomical terms in large gene sets.
    Zebrafish, 10 (3): 303-15
  • A Marsico et al. (2010)
    Structural clustering reveals novel structural and functional motifs in alpha-helical transmembrane proteins.
    BMC Bioinformatics, 11: 204

For more Marsico publications click here.

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