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Journal Article (21)

  1. 1.
    Journal Article
    Rykalina, V.; Shadrin, A.; Amstislavskiy, V.; Rogaev, E. I.; Lehrach, H.; Borodina, T. A.: Exome sequencing from nanogram amounts of starting DNA: comparing three approaches. PLoS One 9 (7) (2014)
  2. 2.
    Journal Article
    Colonna, V.; Ayub, Q.; Chen, Y.; Pagani, L.; Luisi, P.; Pybus, M.; Garrison, E.; Xue, Y.; Tyler-Smith, C.; 1000 Genomes Project, C. et al.; Sudbrak, R.; Albrecht, M.; Amstislavskiy, V.; Borodina, T. A.; Dahl, A.; Davydov, A.; Herwig, R.; Marquardt, P.; Mertes, F.; Nietfeld, W.; Parkhomchuk, D.; Soldatov, A. V.; Timmermann, B.; Tolzmann, M.; Lehrach, H.; Yaspo, M. L.: Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences. Genome Biology: Biology for the Post-Genomic Era 15 (6) (2014)
  3. 3.
    Journal Article
    Abecasis, G. R.; Auton, A.; Brooks, L. D.; DePristo, M. A.; Durbin, R. M.; Handsaker, R. E.; Kang, H. M.; Marth, G. T.; McVean, G. A.; The 1000 Genomes Project Consortium et al.; Sudbrak, R.; Albrecht, M.; Amstislavskiy, V.; Borodina, T. A.; Davydov, A.; Herwig, R.; Lienhard, M.; Mertes, F.; Sultan, M.; Timmermann, B.; Yaspo, M. L.; Lehrach, H.: An integrated map of genetic variation from 1,092 human genomes. Nature 491 (7422), pp. 56 - 65 (2012)
  4. 4.
    Journal Article
    The 1000 Genomes Project Consortium; Sudbrak, R.; Albrecht, M.; Amstislavskiy, V.; Borodina, T. A.; Dahl, A.; Davydov, A.; Herwig, R.; Marquardt, P.; Mertes, F. et al.; Nietfeld, W.; Parkhomchuk, D.; Soldatov, A.; Timmermann, B.; Tolzmann, M.; Lehrach, H.: The 1000 Genomes Project: data management and community access. Nature methods 9 (5) (2012)
  5. 5.
    Journal Article
    MacArthur, D. G.; Balasubramanian, S.; Frankish, A.; 1000 Genomes Project, C.; Sudbrak, R.; Albrecht , M. W.; Amstislavskiy, V.; Borodina, T. A.; Dahl, A.; Davydov, A. et al.; Herwig, R.; Marquardt, P.; Mertes, F.; Nietfeld, W.; Parkhomchuk, D.; Soldatov, A.; Timmermann, B.; Tolzmann, M.; Lehrach, H.: A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes. Science 335 (6070), pp. 823 - 828 (2012)
  6. 6.
    Journal Article
    Tsend-Ayush, E.; Kortschak, R. D.; Bernard, P.; Lim, S. L.; Ryan, J.; Rosenkranz, R.; Borodina, T.; Dohm, J. C.; Himmelbauer, H.; Harley, V. R. et al.; Grützner, F.: Identification of mediator complex 26 (Crsp7) gametologs on platypus X1 and Y5 sex chromosomes: a candidate testis-determining gene in monotremes? Chromosome Research 20 (1), pp. 127 - 138 (2012)
  7. 7.
    Journal Article
    Borodina, T.; Adjaye, J.; Sultan, M.: A strand-specific library preparation protocol for RNA sequencing. Methods in Enzymology 500, pp. 79 - 98 (2011)
  8. 8.
    Journal Article
    Salton, M.; Elkon, R.; Borodina, T.; Davydov, A.; Yaspo, M. L.; Halperin, E.; Shiloh, Y.: Matrin 3 binds and stabilizes mRNA. PLoS ONE 6 (8), p. e23882 (2011)
  9. 9.
    Journal Article
    Warnatz, H. J.; Schmidt, D.; Manke, T.; Piccini, I.; Sultan, M.; Borodina, T.; Balzereit, D.; Wruck, W.; Soldatov, A.; Vingron, M. et al.; Lehrach, H.; Yaspo, M. L.: The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle. The Journal of Biological Chemistry 286 (26), pp. 23521 - 32 (2011)
  10. 10.
    Journal Article
    Parkhomchuk, D.; Borodina, T.; Amstislavskiy, V.; Banaru, M.; Hallen, L.; Krobitsch, S.; Lehrach, H.; Soldatov, A.: Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Research 37 (18), p. e123 - e123 (2009)
  11. 11.
    Journal Article
    Parkhomchuk, D.; Borodina, T.; Amstislavskiy, V.; Banaru, M.; Hallen, L.; Krobitsch, S.; Lehrach, H.; Soldatov, A.: Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Research 37 (18), p. e123 - e123 (2009)
  12. 12.
    Journal Article
    Schweiger, M. R.; Kerick, M.; Timmermann, B.; Albrecht, M. W.; Borodina, T.; Parkhomchuk, D.; Zatloukal, K.; Lehrach, H.: Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis. PLoS ONE 4 (5), p. e5548 - e5548 (2009)
  13. 13.
    Journal Article
    Rosenkranz, R.; Borodina, T.; Lehrach, H.; Himmelbauer, H.: Characterizing the mouse ES cell transcriptome with Illumina sequencing. Genomics 92 (4), pp. 187 - 194 (2008)
  14. 14.
    Journal Article
    Dohm, J. C.; Lottaz, C.; Borodina, T.; Himmelbauer, H.: Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Research 36 (16), p. e105 - e105 (2008)
  15. 15.
    Journal Article
    Sultan, M.; Schulz, M. H.; Hugues, R.; Magen, A.; Klingenhoff, A.; Scherf, M.; Seifert, M.; Borodina, T.; Soldatov, A.; i Parkhomchuk, D. et al.; Schmidt, D.; O'Keeffe, S.; Haas, S.; Vingron, M.; Lehrach, H.; Yaspo, M.-L.: A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome. Science 321 (5891), pp. 956 - 960 (2008)
  16. 16.
    Journal Article
    Dohm, J. C.; Lottaz, C.; Borodina, T.; Himmelbauer, H.: SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. Genome Research 17 (11), pp. 1697 - 1706 (2007)
  17. 17.
    Journal Article
    Borodina, T. A.; Lehrach, H.; Soldatov, A. V.: Ligation detection reaction-TaqMan procedure for single nucleotide polymorphism detection on genomic DNA. Analytical Biochemistry 333, pp. 309 - 319 (2004)
  18. 18.
    Journal Article
    Kozhekbaeva, Z. M.; Borodina, T. A.; Borinskaya, S. A.; Gusar, V. A.; Feschenko, S. P.; Akhmetova, V. L.; Khusainova, R. I.; Gupalo, E. Y.; Spitsyn, V. A.; Grechanina, E. J. et al.; Khusnutdinova, E. K.; Yankovsky, N. K.: Distribution of the HIV-1 resistance-conferring alleles (CCR5delta32, CCR2-64I, and SDF1-3primeA) in Russian, Ukrainian, and Belarusian Populations. Russian Journal of Genetics 40 (10), pp. 1149 - 1155 (2004)
  19. 19.
    Journal Article
    Rickert, A. M.; Borodina, T. A.; Kuhn, E. J.; Lehrach, H.; Sperling, S.: Refinement of single-nucleotide polymorphism genotyping methods on human genomic DNA: amplifluor allele-specific polymerase chain reaction versus ligation detection reaction-TaqMan. Analytical Biochemistry 330 (2), pp. 288 - 297 (2004)
  20. 20.
    Journal Article
    Borodina, T. A.; Lehrach, H.; Soldatov, A. V.: DNA purification on homemade silica spin-columns. Analytical Biochemistry 321 (1), pp. 135 - 137 (2003)
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