Publications of T. Manke

Bu, H.; Schweiger, M. R.; Manke, T.; Wunderlich, A.; Timmermann, B.; Kerick, M.; Pasqualini, L.; Shehu, E.; Fuchsberger, C.; Cato, A. C. et al.; Klocker, H.: Anterior gradient 2 and 3--two prototype androgen-responsive genes transcriptionally upregulated by androgens and by oestrogens in prostate cancer cells. FEBS Journal 280 (5), pp. 1249 - 66 (2013)

Ott, C. E.; Grunhagen, J.; Jager, M.; Horbelt, D.; Schwill, S.; Kallenbach, K.; Guo, G.; Manke, T.; Knaus, P.; Mundlos, S. et al.; Robinson, P. N.: MicroRNAs differentially expressed in postnatal aortic development downregulate elastin via 3' UTR and coding-sequence binding sites. PLoS ONE 6 (1), p. e16250 (2011)

Thomas-Chollier, M.; Hufton, A.; Heinig, M.; O'Keeffe, S.; Masri, N. E.; Roider, H. G.; Manke, T.; Vingron, M.: Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs. Nat Protoc 6 (12), pp. 1860 - 9 (2011)

Warnatz, H. J.; Schmidt, D.; Manke, T.; Piccini, I.; Sultan, M.; Borodina, T.; Balzereit, D.; Wruck, W.; Soldatov, A.; Vingron, M. et al.; Lehrach, H.; Yaspo, M. L.: The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle. The Journal of Biological Chemistry 286 (26), pp. 23521 - 32 (2011)

Warnatz, H. J.; Querfurth, R.; Guerasimova, A.; Cheng, X.; Haas, S. A.; Hufton, A. L.; Manke, T.; Vanhecke, D.; Nietfeld, W.; Vingron, M. et al.; Janitz, M.; Lehrach, H.; Yaspo, M. L.: Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. Nucleic Acids Research 38 (18), pp. 6112 - 6123 (2010)

Manke, T.; Heinig, M.; Vingron, M.: Quantifying the effect of sequence variation on regulatory interactions. Hum Mutation 31 (4), pp. 477 - 483 (2010)

Schaefer, A. S.; Richter, G. M.; Nothnagel, M.; Manke, T.; Dommisch, H.; Jacobs, G.; Arlt, A.; Rosenstiel, P.; Noack, B.; Groessner-Schreiber, B. et al.; Jepsen, S.; Loos, B. G.; Schreiber, S.: A genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis. Human Molecular Genetics 19 (3), pp. 553 - 562 (2010)

Cheng, X.; Guerasimova, A.; Manke, T.; Rosenstiel, P.; Haas, S.; Warnatz, H. J.; Querfurth, R.; Nietfeld, W.; Vanhecke, D.; Lehrach, H. et al.; Yaspo, M. L.; Janitz, M.: Screening of human gene promoter activities using transfected-cell arrays. Gene 450 (1-2), pp. 48 - 54 (2010)

Rödelsperger, C.; Köhler, S.; Schulz, M. H.; Manke, T.; Bauer, S.; Robinson, P. N.: Short ultraconserved promoter regions delineate a class of preferentially expressed alternatively spliced transcripts. Genomics 94 (5), pp. 308 - 316 (2009)

Ott, C.-E.; Bauer, S.; Manke, T.; Ahrens, S.; Rödelsperger, C.; Grünhagen, J.; Kornak, U.; Duda, G.; Mundlos, S.; Robinson, P. N.: Promiscuous and depolarization-induced immediate-early response genes are induced by mechanical strain of osteoblasts. Journal of Bone and Mineral Research 24 (7), pp. 1247 - 1262 (2009)

Roider, H. G.; Manke, T.; O'Keeffe, S.; Vingron, M.; Haas, S. A.: PASTAA: identifying transcription factors associated with sets of co-regulated genes. Bioinformatics 25 (4), pp. 435 - 442 (2009)

Stritt, C.; Stern, S.; Harting, K.; Manke, T.; Sinske, D.; Schwarz, H.; Vingron, M.; Nordheim, A.; Knöll, B.: Paracrine control of oligodendrocyte differentiation by SRF-directed neuronal gene expression. Nature Neuroscience 12 (4), pp. 418 - 427 (2009)

Vingron, M.; Brazma, A.; Coulson, R.; van Helden, J.; Manke, T.; Palin, K.; Sand, O.; Ukkonen, E.: Integrating sequence, evolution and functional genomics in regulatory genomics. Genome Biology 10 (1), p. 202 - 202 (2009)

Manke, T.; Roider, H. G.; Vingron, M.: Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions. PLoS Computational Biology 4 (3), p. e1000039 - e1000039 (2008)

Mao, L.; Zabel, C.; Herrmann, M.; Nolden, T.; Mertes, F.; Magnol, L.; Chabert, C.; Hartl, D.; Herault, Y.; Delabar, J. M. et al.; Manke, T.; Himmelbauer, H.; Klose, J.: Proteomic shifts in embryonic stem cells with gene dose modifications suggest the presence of balancer proteins in protein regulatory networks. PLoS One 2 (11), p. e1218 - e1218 (2007)

Roider, H. G.; Kanhere, A.; Manke, T.; Vingron, M.: Predicting transcription factor affinities to DNA from a biophysical model. Bioinformatics 23 (2), pp. 134 - 141 (2007)

Manke, T.; Demetrius, L.; Vingron, M.: An entropic characterization of protein interaction networks and cellular robustness. Interface: Journal of the Royal Society 11 (3), pp. 843 - 850 (2006)

Irlbacher, H.; Franke, J.; Manke, T.; Vingron, M.; Ehrenhofer-Murray, A. E.: Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression. Genes & Development 19 (15), pp. 1811 - 1822 (2005)

Demetrius, L.; Manke, T.: Robustness and network evolution--an entropic principle. Physica A: Statistical and Theoretical Physics 364 (3-4), pp. 682 - 696 (2005)

Manke, T.; Bringas, R.; Vingron, M.: Correlating protein-DNA and protein-protein interaction networks. Journal of Molecular Biology 333 (1), pp. 75 - 85 (2003)