Publications of Franz-Josef Müller
All genres
Journal Article (19)
1.
Journal Article
: Rapid brain tumor classification from sparse epigenomic data. Nature Medicine 31 (3), pp. 840 - 848 (2025)
2.
Journal Article
26, pp. 51 - 57 (2024)
Rapid intraoperative amplicon sequencing of CNS tumor markers. Computational and Structural Biotechnology Journal 3.
Journal Article
: Validation of the predictive value of BDNF -87 methylation for antidepressant treatment success in severely depressed patients-a randomized rater-blinded trial. Trials 25 (1), Article 247 (2024)
4.
Journal Article
: Developmental trajectories and cooperating genomic events define molecular subtypes of BCR::ABL1-positive ALL. Blood 143 (14), pp. 1391 - 1398 (2024)
5.
Journal Article
24 (1), Article 194 (2024)
Imagery rescripting and cognitive restructuring for inpatients with moderate and severe depression - a controlled pilot study. BMC Psychiatry 6.
Journal Article
626 (8001), pp. 1116 - 1124 (2024)
Autonomous transposons tune their sequences to ensure somatic suppression. Nature 7.
Journal Article
: Classification of Brain Tumors by Nanopore Sequencing of Cell-Free DNA from Cerebrospinal Fluid. Clinical Chemistry 70 (1), pp. 250 - 260 (2024)
8.
Journal Article
: Dynamic antagonism between key repressive pathways maintains the placental epigenome. Nature Cell Biology 25 (4), pp. 579 - 591 (2023)
9.
Journal Article
: Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature Cell Biology 24, pp. 981 - 995 (2022)
10.
Journal Article
: Dnmt1 has de novo activity targeted to transposable elements. Nature Structural and Molecular Biology 28 (7), pp. 594 - 603 (2021)
11.
Journal Article
: TETs compete with DNMT3 activity in pluripotent cells at thousands of methylated somatic enhancers. Nature Genetics 52 (8), pp. 819 - 827 (2020)
12.
Journal Article
: Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing. Nature Biotechnology 37 (12), pp. 1478 - 1481 (2019)
13.
Journal Article
35 (22), pp. 4770 - 4772 (2019)
Nanopype: A modular and scalable nanopore data processing pipeline. Bioinformatics 14.
Journal Article
28 (4), pp. 615 - 627 (2019)
Sensory neuropathy-causing mutations in ATL3 affect ER-mitochondria contact sites and impair axonal mitochondrial distribution. Human Molecular Genetics 15.
Journal Article
33, pp. 20 - 24 (2018)
Generation of an iPSC line of a patient with Angelman syndrome due to an imprinting defect. Stem Cell Research 16.
Journal Article
33, pp. 120 - 124 (2018)
Generation of two human isogenic iPSC lines from fetal dermal fibroblasts. Stem Cell Research 17.
Journal Article
: Assessment of Established Techniques to Determine Developmental and Malignant Potential of Human Pluripotent Stem Cells. Nature Communications 9 (1), 1925 (2018)
18.
Journal Article
: Mutations in PMPCB Encoding the Catalytic Subunit of the Mitochondrial Presequence Protease Cause Neurodegeneration in Early Childhood. American Journal of Human Genetics 102 (4), pp. 557 - 573 (2018)
19.
Journal Article
: Stem Cell Differentiation as a Non-Markov Stochastic Process. Cell Systems 5 (3), e7, pp. 268 - 282 (2017)
Conference Paper (1)
20.
Conference Paper
Nanopore SimulatION – a raw data simulator for Nanopore Sequencing. In: 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp. 1536 - 1543. 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Madrid, Spain, December 03, 2018 - December 06, 2018. (2019)