Current Position
SAP
Potsdam, Germany
www.linkedin.com/in/stephanaiche
Education
- 2003 - 2006: B.Sc. of Bioinformatics at Free University Berlin (Germany)
- 2006 - 2008: M.Sc. in Bioinformatics at Free University Berlin (Germany)
- 2008 - 2013: PhD studies at the IMPRS-CBSC supervised by Prof. Dr. Knut Reinert
Dissertation
- Submitted May 2013
- Inferring Proteolytic Processes from Mass Spectrometry Time Series Data
Scientific Interests
- algorithm development
- sequence (re)assembly
- protein sequencing
Publications from time as IMPRS fellow
- M Walzer et al. (2014) qcML: an exchange format for quality control metrics from mass spectrometry experiments. Mol Cell Proteomics, 13 (8): 1905-13
- S Aiche, K Reinert, C Schütte, D Hildebrand, H Schlüter, TO Conrad (2012). Inferring proteolytic processes from mass spectrometry time series data using degradation graphs. PLoS One, 7(7): e40656
- C Bielow, S Aiche, S Andreotti, K Reinert (2011) MSSimulator: Simulation of mass spectrometry data. J Proteome Res., 10(7): 2922-9
- Separation of repeats in shotgun assembly data. M.Sc. thesis at the Free University Berlin, 2008