Combination and automated annotation of SBML models
Dimension reduction in differential equation models
Stochastic, combinatorial modeling
Publications from time as IMPRS fellow
F Krause et al. (2013) biographer: web based editing and rendering of SBGN compliant biochemical networks. Bioinformatics, 29 (11): 1467-8
M Schulz, E Klipp, W Liebermeister (2012) Propagating semantic information in biochemical network models. Bioinformatics, 13 (1): 18
Book chapter M Schulz and E Klipp (2010) Introduction to systems biology in Systems Biology in Psychiatric Research: From High-Throughput Data to Mathematical Modeling (eds F Tretter, PJ Gebicke-Haerter, ER Mendoza, G Winterer) Wiley-VCH Verlag, Weinheim, Germany
Book chapter F Krause, M Schulz, N Swainston, W Liebermeister (2011) Sustainable model building: the role of standards and biological semantics. Methods in Enzymology, 500 (Chapter 19): 371-95
M Schulz, F Krause, N Le Novère, E Klipp, W Liebermeister (2011) Retrieval, alignment, and clustering of computational models based on semantic annotations. Mol Syst Biol., 7: 512
T Lubitz, M Schulz, E Klipp, W Liebermeister (2010) Parameter balancing in kinetic models of cell metabolism. J Phys Chem B., 114 (49):16298-303
F Krause, J Uhlendorf, T Lubitz, M Schulz, E Klipp, W Liebermeister (2010) Annotation and merging of SBML models with semanticSMBL. Bioinformatics, 26 (3): 421-2
M Schulz, BM Bakker, E Klipp (2009) TIde: a software for the systematic scanning of drug targets in kinetic network models. BMC Bioinformatics, 10: 344
M Schulz, J Uhlendorf, E Klipp, W Liebermeister (2006) SBMLmerge, a System for Combining Biochemical Network Models. Genome Informatics, 17 (1): 62-71
Dimension Reduction of Biochemical Network Models: Implementation and Comparison of Different Algorithms B.Sc. thesis at the Free University Berlin, 2006