Current Position

Nottingham University School of Psychology

University Park, Nottingham NG7 2RD, UK

www.nottingham.ac.uk/psychology/people/markus.bauer

Education

• 1999 - June 2004: Computer Science/ Vienna University of Technology, graduated as Dipl.-Ing. (comparable to M.Sc.), with honors
• January 2003 - June 2003: Computer Science at the University of Aarhus (Denmark)
• Three years experience as a tutor, especially in the area of algorithms and data structures
• Scholarships
  • 'Förderstipendium' (scholarship to support work on diploma thesis) of Vienna University of Technology
  • IMPRS scholarship

Dissertation

• Submitted in April 2008
• A combinatorial approach to RNA sequence-structure alignments

Publications from time as IMPRS fellow

• Knut Reinert, Markus Bauer, Andreas Döring, Gunnar W. Klau, and Aaron L. Halpern (2007)
  A general paradigm for fast, adaptive clustering of biological sequences
  Proc. of GCB 2007
• Markus Bauer, Gunnar W. Klau and Knut Reinert (2008)
  An Exact Mathematical Programming Approach to Multiple RNA Sequence-Structure Alignment.
  Algorithmic Operations Research 3 (2)
• Markus Bauer, Gunnar W. Klau and Knut Reinert (2007)
  Accurate Multiple Sequence-Structure Alignment of RNA Sequences Using Combinatorial Optimization.
  BMC Bioinformatics 8: 271
• Patrick May, Gunnar W. Klau, Markus Bauer, and Thomas Steinke (2007)
  Accelerated microRNA Precursor Detection Using the Smith-Waterman Algorithm on FPGAs.
  in Proceedings of GCCB 2006 (International Workshop on Distributed, High-Performance, and Grid Computing in Computational Biology, Eilat, Israel, January 21-24, 2007), W. Dubitzky et al. (eds.)
  Lecture Notes in Bioinformatics, 4360, pp. 19-32, Springer, Berlin, 2007
• Bauer, M., Klau, G.W., Reinert, K. (2005)
  Multiple Structural RNA Alignment with Lagrangian Relaxation.
  Proceedings of the 5th Workshop on Algorithms Bioinformatics (WABI-05)
• Bauer, M., Klau, G.W., Reinert, K. (2005)
  Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Relaxation.
  Proceedings of the 1st International Symposium on Computational Life Science (CompLife-05), pages 217-228
• Markus Bauer and Gunnar Klau (2004).
  Structural Alignment of Two RNA Sequences with Lagrangian Relaxation.
  Proceedings of the 15th International Symposium, ISAAC 2004, Hong Kong, Springer Verlag, LNCS 3341, 113-125.