• 1999-2003: B.Sc. in Biotechnology at University of Tehran, Tehran, Iran
  • 2003-2006: M.Sc. in Molecular Biotechnology at University of Tehran, Tehran, Iran
  • 2007-2011: PhD studies at the IMPRS-CBSC supervised by Prof. Dr. A. Bockmayr


Scientific Interests

  • Analysis of factors that shape protein structures
  • Analysis of genomes
  • Analysis of the structure and function of metabolic and gene regulatory networks.

Selected publications

  • SA Marashi, L David, A Bockmayr (2012)
    Analysis of metabolic subnetworks by flux cone projection.
    Algorithms Mol Biol., 7 (1): 17
  • SA Marashi, L David, A Bockmayr (2012)
    On flux coupling analysis of metabolic subsystems.
    J Theor Biol., 302: 62-9
  • L David, SA Marashi, A Larhlimi, B Mieth, A Bockmayr (2011)
    FFCA: A feasibility-based method for flux coupling analysis of metabolic networks.
    BMC Bioinformatics, 12 (1): 236
  • SA Marashi, A Bockmayr (2011)
    Flux coupling analysis of metabolic networks is sensitive to missing reactions.
    BioSystems, 103 (1): 57-66
  • A Momen-Roknabadi, M Sadeghi, H Pezeshk, SA Marashi (2008)
    Impact of residue accessible surface area on the prediction of protein secondary structures.
    BMC Bioinformatics, 9: 357.
  • A Sheari, M Kargar, A Katanforoush, S Arab, M Sadeghi, H Pezeshk, C Eslahchi, SA Marashi (2008)
    A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins.
    BMC Bioinformatics, 9: 274.
  • F FarzadFard, N Gharaei, H Pezeshk, SA Marashi (2008)
    Beta-sheet capping: Signals that initiate and terminate beta-sheet formation.
    J. Struct. Biol., 161 (1): 101-10.
  • SA Marashi, M Kargar, A Katanforoush, H Abolhassani and M Sadeghi (2007)
    Evolution of "ligand diffusion chreodes" on protein surface models: a genetic algorithm study.
    Chem. Biodivers., 4,(12): 2766-71.
  • SA Marashi, R Behrouzi, H Pezeshk (2007)
    Adaptation of proteins to different environments: A comparison of proteome structural properties in Bacillus subtilis and Escherichia coli.
    J. Theor. Biol., 244 (1): 127-132.
  • "Improvement of Splice Site Prediction in Genomic DNA Sequences" (2006)
    M.Sc. Thesis at University of Tehran
  • SA Marashi, C Eslahchi, H Pezeshk, M Sadeghi (2006)
    Impact of RNA structure on the prediction of donor and acceptor splice sites.
    BMC Bioinformatics., 7: 297.
  • SA Marashi, H Goodarzi, M Sadeghi, C Eslahchi, H Pezeshk (2006)
    Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks.
    Comput. Biol. Chem., 30 (1): 50-7.
  • SA Marashi, R Behrouzi (2005)
    Modeling directed ligand passage toward enzyme active site by a 'double cellular automata' model.
    Biochem. Biophys. Res. Commun., 333 (1): 1-4.
  • SA Marashi, Z Ghalanbor (2004)
    Correlations between genomic GC levels and optimal growth temperatures are not 'robust'.
    Biochem. Biophys. Res. Commun., 325 (2): 381-3.
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