Analysis of the structure and function of metabolic and gene regulatory networks.
SA Marashi, L David, A Bockmayr (2012) Analysis of metabolic subnetworks by flux cone projection. Algorithms Mol Biol., 7 (1): 17
SA Marashi, L David, A Bockmayr (2012) On flux coupling analysis of metabolic subsystems. J Theor Biol., 302: 62-9
L David, SA Marashi, A Larhlimi, B Mieth, A Bockmayr (2011) FFCA: A feasibility-based method for flux coupling analysis of metabolic networks. BMC Bioinformatics, 12 (1): 236
SA Marashi, A Bockmayr (2011) Flux coupling analysis of metabolic networks is sensitive to missing reactions. BioSystems, 103 (1): 57-66
A Momen-Roknabadi, M Sadeghi, H Pezeshk, SA Marashi (2008) Impact of residue accessible surface area on the prediction of protein secondary structures. BMC Bioinformatics,9: 357.
A Sheari, M Kargar, A Katanforoush, S Arab, M Sadeghi, H Pezeshk, C Eslahchi, SA Marashi (2008) A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins. BMC Bioinformatics,9: 274.
F FarzadFard, N Gharaei, H Pezeshk, SA Marashi (2008) Beta-sheet capping: Signals that initiate and terminate beta-sheet formation. J. Struct. Biol., 161 (1): 101-10.
SA Marashi, M Kargar, A Katanforoush, H Abolhassani and M Sadeghi (2007) Evolution of "ligand diffusion chreodes" on protein surface models: a genetic algorithm study. Chem. Biodivers., 4,(12): 2766-71.
SA Marashi, R Behrouzi, H Pezeshk (2007) Adaptation of proteins to different environments: A comparison of proteome structural properties in Bacillus subtilis and Escherichia coli. J. Theor. Biol.,244 (1): 127-132.
"Improvement of Splice Site Prediction in Genomic DNA Sequences" (2006) M.Sc. Thesis at University of Tehran
SA Marashi, C Eslahchi, H Pezeshk, M Sadeghi (2006) Impact of RNA structure on the prediction of donor and acceptor splice sites. BMC Bioinformatics., 7: 297.
SA Marashi, H Goodarzi, M Sadeghi, C Eslahchi, H Pezeshk (2006) Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks. Comput. Biol. Chem.,30 (1): 50-7.
SA Marashi, R Behrouzi (2005) Modeling directed ligand passage toward enzyme active site by a 'double cellular automata' model. Biochem. Biophys. Res. Commun.,333 (1): 1-4.
SA Marashi, Z Ghalanbor (2004) Correlations between genomic GC levels and optimal growth temperatures are not 'robust'. Biochem. Biophys. Res. Commun.,325 (2): 381-3.