Publications

Journal publications and preprints. (*: Co-first, ^‡: Co-corresponding)

2025

R.T. Perelman, G.M. Church^‡ and J. Stein^‡.
A simple, ultrastable, and cost-effective oxygen-scavenging system for long-term DNA-PAINT imaging.
Small (2025). e09092
J. Stein^‡, M. Ericsson, M. Nofal, L. Magni, S. Aufmkolk, R. B. McMillan, L. Breimann, C. P. Herlihy, S. D. Lee, A. Willemin, J. Wohlmann, L. Arguedas-Jimenez, P. Yin, A. Pombo, G. M. Church^‡ and C.-t. Wu^‡.
Cryosectioning-enhanced super-resolution microscopy for single-protein imaging across cells and tissues.
Proceedings of the National Academy of Sciences (2025). 122 (32) e2504578122
J. Stein*^,‡, L. Magni, G. M. Church^‡.
DNA-PAINT imaging with hydrogel imprinting and clearing.
ACS Sensors (2025). 10 (5), 3340-3346
A. Hillsley, J. Stein, P.W. Tillberg, D.L. Stern, J. Funke.
A Bayesian Model to Count the Number of Two-State Emitters in a Diffraction Limited Spot.
Nano Letters (2025). 25 (15), 6059-6068

C. Niederauer, C. Nguyen, M. Wang-Henderson, J. Stein, S. Strauss, A. Cumberworth, F. Stehr, R. Jungmann, P. Schwille and K.A. Ganzinger.
Dual-color DNA-PAINT single-particle tracking enables extended studies of membrane protein interactions.
Nature Communications (2023). 14, 4345.

J. Stein*, F. Stehr*, R. Jungmann and P. Schwille.
Calibration-free counting of low molecular copy numbers in single DNA-PAINT localization clusters.
Biophysical Reports (2021). 1 (2), 100032.
Y. Qutbuddin, J.-H. Krohn, G. Brüggenthies, J. Stein, S. Gavrilovic, F. Stehr and P. Schwille.
Design Features to Accelerate the Higher-Order Assembly of DNA Origami on Membranes.
The Journal of Physical Chemistry B (2021). 125 (48).
F. Stehr*, J. Stein*, J. Bauer, C. Niederauer, R. Jungmann, K. Ganzinger and P. Schwille.
Tracking Single Particles for Hours via Continuous DNA-mediated Fluorophore Exchange.
Nature Communications (2021). 12 (1), 1-8.

F. Schueder, J. Stein, F. Stehr, A. Auer, B. Sperl, M.T. Strauss, P. Schwille and R. Jungmann.
An order of magnitude faster DNA-PAINT imaging by optimized sequence design and buffer conditions.
Nature Methods (2019). 16, 1101–1104.
J. Stein*, F. Stehr*, P. Schueler, Philipp Blumhardt, F. Schueder, J. Mücksch, R. Jungmann and P. Schwille.
Toward absolute molecular numbers in DNA-PAINT.
Nano Letters (2019). 19 (11), 8182–8190.
F. Stehr*, J. Stein*, F. Schueder, P. Schwille and R. Jungmann.
Flat-top TIRF illumination boosts DNA-PAINT imaging and quantification.
Nature Communications (2019). 10 (1), 1268.
O.K. Wade, J.B. Woehrstein, P.C. Nickels, S. Strauss, F. Stehr, J. Stein, F. Schueder, M.T. Strauss, M. Ganji, J. Schnitzbauer, H. Grabmeyer, P. Yin, P. Schwille and R. Jungmann.
124-Color Super-resolution Imaging by Engineering DNA-PAINT Blinking Kinetics.
Nano Letters (2019). 19 (4), 2641–2646.
J. Nguyen, D.V. Conca, J. Stein, L. Bovo, C.A. Howard and I. Llorente Garcia.
Magnetic control of graphitic microparticles in aqueous solutions.
Proceedings of the National Academy of Sciences (2019). 116 (7), 2425–2434.

P. Blumhardt, J. Stein, J. Mücksch, F. Stehr, J. Bauer, R. Jungmann and P. Schwille.
Photo-Induced Depletion of Binding Sites in DNA-PAINT Microscopy.
Molecules (2018). 23 (12), 3165.