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Said, N.; Hilal, T.; Sunday, N. D.; Khatri, A.; Bürger, J.; Mielke, T.; Belogurov, G. A.; Loll, B.; Sen, R.; Artsimovitch, I. et al.; Wahl, M. C.: Steps toward translocation-independent RNA polymerase inactivation by terminator ATPase ρ. Science 371 (6524), eabd1673 (2021)

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Jasnovidova, O.; Arnold, M.; Mayer, A.: Illuminating enhancer transcription at nucleotide resolution with native elongating transcript sequencing (NET-Seq). In: Enhancers and Promoters - Methods and Protocols (Methods in Molecular Biology ; 2351), Bd. 2351, S. 41 - 65 (Hg. Borggrefe, T.). Humana, New York, NY (2021)

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Klarner, H.; Tonello, E.; Cifuentes Fontanals, L.; Janody, F.; Chaouiya, C.; Siebert, H.: Detection of markers for discrete phenotypes. In: CSBio2021, S. 64 - 68. CSBio2021: The 12th International Conference on Computational Systems-Biology and Bioinformatics, Virtual Event, 14. Oktober 2021 - 15. Oktober 2021. Association for Computing Machinery, New York, NY (2021)

Hochschulschrift - Doktorarbeit (7)

85.
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Schulte-Sasse, R.: Integration of multi-omics data with graph convolutional networks to identify cancer-associated genes. Dissertation (2021)
86.
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Bothe, A. M.: Investigating the Genomic Effects of Glucocorticoid Receptor Activation: An Analysis of Transcriptional Memory and Mechanisms That Direct Divergent Genomic Occupancy of Related Transcription Factors. Dissertation (2021)
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Barros de Andrade e Sousa, L.: Using interpretable machine learning to understand gene silencing dynamics during X-chromosome inactivation. Dissertation, vii, 159 S. (2021)
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Rodrigues de Melo Costa, V.: Genome-wide Determination Of Splicing Efficiency And Dynamics From RNA-Seq Data. Dissertation, ix, 100 S. (2021)
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Barel, G.: Network Propagation with Node Core for Genotype-Phenotype Associations and Module Identification. Dissertation, xii, 161 S. (2021)
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Zehnder, T.: Computational Approaches for the Prediction of Gene Regulatory Elements and the Analysis of their Evolutionary Conservation. Dissertation (2021)
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Heller, D.: Structural variant calling using third-generation sequencing data. Dissertation, xiii, 139 S. (2021)

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Palmer, E. E.; Nguyen, M. H.; Forwood, C.; Kalscheuer, V. M.: CLCN4-Related Neurodevelopmental Disorder. (2021)
93.
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van der Weijden, V.; Bulut-Karslioglu, A.: Molecular Regulation of Paused Pluripotency in Early Mammalian Embryos and Stem Cells. (2021)
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Glaser, J.; Mundlos, S.: 3D or Not 3D: Shaping the Genome during Development. (2021)
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Ilik, I. A.; Aktas, T.: Nuclear speckles: dynamic hubs of gene expression regulation. (2021)

Preprint (4)

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Preprint
Ringel, A.; Szabo, Q.; Chiariello, A. M.; Chudzik, K.; Schöpflin, R.; Rothe, P.; Mattei, A. L.; Zehnder, T.; Harnett, D.; Laupert, V. et al.; Bianco, S.; Hetzel, S.; Phan, M.; Schindler, M.; Ibrahim, D. M.; Paliou, C.; Esposito, A.; Prada-Medina, C. A.; Haas, S.; Giere, P.; Vingron, M.; Wittler, L.; Meissner, A.; Nicodemi, M.; Cavalli, G.; Bantignies, F.; Mundlos, S.; Robson, M.: Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs. (2021)
97.
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Baranasic, D.; Hörtenhuber, M.; Balwierz, P.; Zehnder, T.; Mukarram, A. K.; Nepal, C.; Varnai, C.; Hadzhiev, Y.; Jimenez- Gonzalez, A.; Li, N. et al.; Wragg, J.; D’Orazio, F.; Díaz, N.; Hernández- Rodríguez, B.; Chen, Z.; Stoiber, M.; Dong, M.; Stevens, I.; Ross, S. E.; Eagle, A.; Martin, R.; Obasaju, P.; Rastegar, S.; McGarvey, A. C.; Kopp, W.; Chambers, E.; Wang, D.; Kim, H. R.; Acemel, R. D.; Naranjo, S.; Lapinski, M.; Chong, V.; Mathavan, S.; Peers, B.; Sauka-Spengler, T.; Vingron, M.; Carninci, P.; Ohler, U.; Lacadie, S. A.; Burgess, S.; Winata, C.; van Eeden, F.; Vaquerizas, J. M.; Gómez-Skarmeta, J. L.; Onichtchouk, D.; Brown, B. J.; Bogdanovic, O.; Westerfield, M.; Wardle, F. C.; Daub, C. O.; Lenhard, B.; Müller, F.: Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish. (2021)
98.
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Lienhard, M.; van den Beucken, T.; Timmermann, B.; Hochradel, M.; Boerno, S.; Caiment, F.; Vingron, M.; Herwig, R.: Long-read transcriptome sequencing analysis with IsoTools. (2021)
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Ambrozkiewicz, M. C.; Borisova, E.; Newman, A. G.; Kraushar, M. L.; Schaub, T.; Dannenberg, R.; Brockmann, M.; Rosário, M.; Turko, P.; Jahn, O. et al.; Kaplan, D. R.; Iwawaki, T.; Spahn, C. M. T.; Rosenmund, C.; Tarabykin, V.: Ire1α-Regulated Rate of mRNA Translation is Required for Acquisition of Identity and Polarity in Upper Layer Cortical Neurons. (2021)
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