Publications of Ralf Herwig

Wolski, W. E.; Lalowski, M.; Martus, P.; Herwig, R.; Giavalisco, P.; Gobom, J.; Sickmann, A.; Lehrach, H.; Reinert, K.: Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process. BMC Bioinformatics 6, p. 285 - 285 (2005)

Adjaye, J.; Huntriss, J.; Herwig, R.; BenKahla, A.; Brink, T. C.; Wierling, C.; Hultschig, C.; Groth, D.; Yaspo, M.-L.; Picton, H. M. et al.; Gosden, R. G.; Lehrach, H.: Primary differentiation in the human blastocyst: comparative molecular portraits of inner cell mass and trophectoderm cells. Stem Cells 23 (10), pp. 1514 - 1525 (2005)

Papakonstantinou, E.; Aletras, A. J.; Glass, E.; Tsogas, P.; Dionyssopoulos, A.; Adjaye, J.; Fimmel, S.; Gouvousis, P.; Herwig, R.; Lehrach, H. et al.; Zouboulis, C. C.; Karakiulakis, G.: Matrix Metalloproteinases of Epithelial Origin in Facial Sebum of Patients with Acne and their Regulation by Isotretinoin. Journal of Investigative Dermatology (New York, NY) 125 (4), pp. 673 - 684 (2005)

Adjaye, J.; Herwig, R.; Herrmann, D.; Wruck, W.; BenKahla, A.; Brink, T. C.; Nowak, M.; Carnwath, J. W.; Hultschig, C.; Niemann, H. et al.; Lehrach, H.: Cross-species hybridisation of human and bovine orthologous genes on high density cDNA microarrays. BMC Genomics 5, p. 83 - 83 (2004)

Bauer, O.; Guerasimova, A.; Sauer, S.; Thamm, S.; Steinfath, M.; Herwig, R.; Janitz, M.; Lehrach, H.; Radelof, U.: Multiplexed hybridizations of positively charge-tagged peptide nucleic acids detected by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry 18 (16), pp. 1821 - 1829 (2004)

Kahlem, P.; Sultan, M.; Herwig, R.; Steinfath, M.; Balzereit, D.; Eppens, B.; Saran, N. G.; Pletcher, M. T.; South, S. T.; Stetten, G. et al.; Lehrach, H.; Reeves, R. H.; Yaspo, M.-L.: Transcript level alterations reflect gene dosage effects across multiple tissues in a mouse model of Down Syndrome. Genome Research 14 (7), pp. 1258 - 1267 (2004)

Dickmeis, T.; Plessy, C.; Rastegar, S.; Aanstad, P.; Herwig, R.; Chalmel, F.; Fischer, N.; Strähle, U.: Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo. Genome Research 14 (2), pp. 228 - 238 (2004)

Poustka, A. J.; Groth, D.; Hennig, S.; Thamm, S.; Cameron, A.; Beck, A.; Reinhardt, R.; Herwig, R.; Panopoulou, G.; Lehrach, H.: Generation, annotation, evolutionary analysis, and database integration of 20,000 unique sea urchin EST clusters. Genome Research 13 (12), pp. 2736 - 2746 (2003)

Dieterich, C.; Herwig, R.; Vingron, M.: Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. Bioinformatics 19 (Suppl. 2), pp. ii50 - ii56 (2003)

Panopoulou, G.; Hennig, S.; Groth, D.; Krause, A.; Poustka, A. J.; Herwig, R.; Vingron, M.; Lehrach, H.: New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes. Genome Research 13 (6), pp. 1056 - 1066 (2003)

Herwig, R.; Schulz, B.; Weisshaar, B.; Hennig, S.; Steinfath, M.; Drungowski, M.; Stahl, D.; Wruck, W.; Menze, A.; O'Brien, J. et al.; Lehrach, H.; Radelof, U.: Construction of a 'unigene' cDNA clone set by oligonucleotide fingerprinting allows access to 25 000 potential sugar beet genes. The Plant Journal 32 (5), pp. 845 - 857 (2002)

Wierling, C. K.; Steinfath, M.; Elge, T.; Schulze-Kremer, S.; Aanstad, P.; Clark, M.; Lehrach, H.; Herwig, R.: Simulation of DNA array hybridization experiments and evaluation of critical parameters during subsequent image and data analysis. BMC Bioinformatics 3 (1), p. 29 - 29 (2002)

Gitton, Y.; Dahmane, N.; Baik, S.; i Altaba, A. R.; Neidhardt, L.; Scholze, M.; Herrmann, B. G.; Kahlem, P.; Benkhala, A.; Schrinner, S. et al.; Yildirimman, R.; Herwig, R.; Lehrach, H.; Yaspo, M.-L.: A gene expression map of human chromosome 21 orthologues in the mouse. Nature 420 (6917), pp. 586 - 590 (2002)

Fuchs, T.; Malecova, B.; Linhart, C.; Sharan, R.; Khen, M.; Herwig, R.; Shmulevich, D.; Elkon, R.; Steinfath, M.; O'Brien, J. K. et al.; Radelof, U.; Lehrach, H.; Lancet, D.; Shamir, R.: DEFOG: A Practical Scheme for Deciphering Families of Genes. Genomics 80 (3), pp. 295 - 302 (2002)

Klipp, E.; Liebermeister, W.; Wierling, C.; Kowald, A.; Lehrach, H.; Herwig, R.: Systems Biology: A Textbook. Wiley-VCH, Weinheim (2009), XXI, 569 pp: Ill., graphs. pp.

Klipp, E.; Herwig, R.; Kowald, A.; Wierling, C.; Lehrach, H.: Systems biology in practice: concepts, implementation and application. Wiley-VCH, Weinheim (2005), 466 pp pp.

Hoehe, M. R.; Herwig, R.: Analysis of 1276 Haplotype-Resolved Genomes Allows Characterization of Cis- and Trans-Abundant Genes. In: Haplotyping. Methods in Molecular Biology (Springer Protocols), Vol. 2590, pp. 237 - 272 (Eds. Peters, B. A.; Drmanac, R.). Humana Press (Springer Science+Business Media, Springer-Verlag GmbH), New York, NY (2022)

Hebels, D. G.; Rasche, A.; Herwig, R.; van Westen, G. J.; Jennen, D. G.; Kleinjans, J. C.: A Systems Biology Approach for Identifying Hepatotoxicant Groups Based on Similarity in Mechanisms of Action and Chemical Structure. In: In Silico Methods for Predicting Drug Toxicity (Ed. Benfenati , E.) (2016)

Vilardell, M.; Herwig, R.: Predictive mechanisms in stem cells: an in vitro system based method for testing carcinogenicity. In: Handbook of Nanotoxicology, Nanomedicine and Stem Cell Use in Toxicology, pp. 337 - 346 (Eds. Sahu, . C.; Casciano, D. A.). John Wiley & Sons, Ltd, Hoboken, NJ (2014)

Bauer, O.; Janitz, M.; Guerasimova, A.; Herwig, R.; Lehrach, H.; Radelof, U.: Oligonucleotide fingerprinting including differental cDNA library screning. In: Analysing gene expression. A handbook of methods: Possibilities and, pp. 463 - 471 (Eds. Lorkowski, S.; Cullen, P.). Wiley-VCH, Weinheim (2002)