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Journal Article (193)
1.
Journal Article
Association Plots: Visualizing associations in high-dimensional correspondence analysis biplots. bioRxiv (Preprint Server) (2020)
2.
Journal Article
370 (6513), pp. 208 - 214 (2020)
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality. Science 3.
Journal Article
2020 (2020)
TADA – a Machine Learning Tool for Functional Annotation based Prioritisation of Putative Pathogenic CNVs. bioRxiv - The Preprint Server for Biology 4.
Journal Article
106 (6), pp. 872 - 884 (2020)
Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases. The American Journal of Human Genetics 5.
Journal Article
27 (4), pp. 442 - 457 (2020)
ModHMM: A Modular Supra-Bayesian Genome Segmentation Method. Journal of Computational Biology 6.
Journal Article
12 (1), pii: E71 (2020)
Single-Cell Analysis Uncovers a Vast Diversity in Intracellular Viral Defective Interfering RNA Content Affecting the Large Cell-to-Cell Heterogeneity in Influenza A Virus Replication. Viruses 7.
Journal Article
20, 20:227 (2019)
CRUP: a comprehensive framework to predict condition-specific regulatory units. Genome Biology: Biology for the Post-Genomic Era 8.
Journal Article
35 (17), pp. 2907 - 2915 (2019)
SVIM: Structural Variant Identification using Mapped Long Reads. Bioinformatics 9.
Journal Article
26 (8), pp. 846 - 865 (2019)
DNA Motif Match Statistics Without Poisson Approximation. Journal of Computational Biology 10.
Journal Article
51 (8), pp. 1263 - 1271 (2019)
Functional dissection of the Sox9-Kcnj2 locus identifies nonessential and instructive roles of TAD architecture. Nature Genetics 11.
Journal Article
178 (1), e29, pp. 242 - 260 (2019)
The Translational Landscape of the Human Heart. Cell 12.
Journal Article
2019, 528877 (2019)
Preformed Chromatin Topology Assists Transcriptional Robustness of Shh during Limb Development. bioRxiv (Preprint Server) 13.
Journal Article
15 (5), e8339 (2019)
Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks. Molecular Systems Biology 14.
Journal Article
20, 157 (2019)
Predicting enhancers in mammalian genomes using supervised hidden Markov models. BMC Bioinformatics 15.
Journal Article
35 (6), pp. 1009 - 1017 (2019)
The Distance Precision Matrix: computing networks from non-linear relationships. Bioinformatics 16.
Journal Article
21 (3), pp. 305 - 310 (2019)
Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations. Nature Cell Biology 17.
Journal Article
23 (6), pp. 900 - 904 (2018)
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency - Correction. Cell Stem Cell 18.
Journal Article
16 (1), 138 (2018)
Classifying human promoters by occupancy patterns identifies recurring sequence elements, combinatorial binding, and spatial interactions. BMC Biology 19.
Journal Article
14 (11), e1007793 (2018)
Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise. PLoS Genetics 20.
Journal Article
50 (10), pp. 1463 - 1473 (2018)
Dynamic 3D chromatin architecture determines enhancer specificity and morphogenetic identity in limb development. Nature Genetics