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Journal Article (9)
1.
Journal Article
18 (1), 1:240 (2017)
PureCLIP: Capturing target-specific protein-RNA interaction footprints from single-nucleotide CLIP-seq data. Genome Biology 2.
Journal Article
45 (19), pp. 11004 - 11018 (2017)
ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data. Nucleic Acids Research (London) 3.
Journal Article
4, 4:e2423v1 (2016)
A statistical model for epigenetic control of miRNAs. PeerJ 4.
Journal Article
203 (4), pp. 1629 - 1640 (2016)
Principles of microRNA Regulation Revealed Through Modeling microRNA Expression. Genetics 5.
Journal Article
214 (3), pp. 454 - 463 (2016)
Genome-wide Chromatin Profiling of Legionella pneumophila-Infected Human Macrophages Reveals Activation of the Probacterial Host Factor TNFAIP2. The Journal of Infectious Diseases 6.
Journal Article
34 (39), pp. 5046 - 5054 (2015)
A long non-coding RNA links calreticulin-mediated immunogenic cell removal to RB1 transcription. Oncogene 7.
Journal Article
9 (2), pp. 542 - 554 (2014)
Microprocessor activity controls differential miRNA biogenesis In Vivo. Cell Reports 8.
Journal Article
10 (3), pp. 303 - 315 (2013)
Zebrafish Expression Ontology of Gene Sets (ZEOGS): a tool to analyze enrichment of zebrafish anatomical terms in large gene sets. Zebrafish 9.
Journal Article
14 (8), p. R84 - R84 (2013)
PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs. Genome Biology Book Chapter (2)
10.
Book Chapter
Ørom, U. A.) (2017)
In silico promoter recognition from deepCAGE data. In: Enhancer RNAs: Methods and Protocols (Ed. 11.
Book Chapter
Computational modeling of microRNA Biogenesis. In: Mathematical Models in Biology, pp. 85 - 98 (Eds. Zazzu, V.; Ferraro, M. B.). Springer International Publishing (2015)