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Journal Article (9)

1. 1.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Krakau, S.; Richard, H.; Marsico, A.: PureCLIP: Capturing target-specific protein-RNA interaction footprints from single-nucleotide CLIP-seq data. Genome Biology 18 (1) (2017)
2. 2.
   MPG.PuRe

   DOI

   Full

   publisher-version
   Journal Article

   Heller, D.; Krestel, R.; Ohler, U.; Vingron, M.; Marsico, A.: ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data. Nucleic Acids Research (London) 45 (19), pp. 11004 - 11018 (2017)
3. 3.
   MPG.PuRe

   DOI

   pre-print
   Journal Article

   Barros de Andrade e Sousa, L.; Marsico, A.: A statistical model for epigenetic control of miRNAs. PeerJ 4 (2016)
4. 4.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Budach, S.; Heinig, M.; Marsico, A.: Principles of microRNA Regulation Revealed Through Modeling microRNA Expression. Genetics 203 (4), pp. 1629 - 1640 (2016)
5. 5.
   MPG.PuRe

   DOI

   Full

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   Du Bois, I.; Marsico, A.; Bertrams, W.; Schweiger, M. R.; Caffrey, B.; Sittka-Stark, A.; Eberhardt, M.; Vera, J.; Vingron, M.; Schmeck, B. T.: Genome-wide Chromatin Profiling of Legionella pneumophila-Infected Human Macrophages Reveals Activation of the Probacterial Host Factor TNFAIP2. The Journal of Infectious Diseases 214 (3), pp. 454 - 463 (2016)
6. 6.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Musahl, A.; Huang, X.; Rusakiewicz, S.; Ntini, E.; Marsico, A.; Kroemer, G.; Kepp, O.; Ørom, U. A.: A long non-coding RNA links calreticulin-mediated immunogenic cell removal to RB1 transcription. Oncogene 34 (39), pp. 5046 - 5054 (2015)
7. 7.
   MPG.PuRe

   DOI

   Full

   publisher-version
   Journal Article

   Conrad, T.; Marsico, A.; Gehre, M.; Ørom, U. A.: Microprocessor activity controls differential miRNA biogenesis In Vivo. Cell Reports 9 (2), pp. 542 - 554 (2014)
8. 8.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Prykhozhij, S.; Marsico, A.; Meijsing, S.: Zebrafish Expression Ontology of Gene Sets (ZEOGS): a tool to analyze enrichment of zebrafish anatomical terms in large gene sets. Zebrafish 10 (3), pp. 303 - 315 (2013)
9. 9.
   MPG.PuRe

   DOI

   publisher-version
   Journal Article

   Marsico, A.; Huska, M.; Lasserre, J.; Hu, H.; Vucicevic, D.; Musahl, A.; Ørom, U. A.; Vingron, M.: PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs. Genome Biology 14 (8) (2013)

Book Chapter (2)

1. 10.
   MPG.PuRe

   DOI

   publisher-version
   Book Chapter

   Yang, X.; Marsico, A.: In silico promoter recognition from deepCAGE data. In: Enhancer RNAs: Methods and Protocols (Ed. Ørom, U. A.) (2017)
2. 11.
   MPG.PuRe

   DOI

   publisher-version
   Book Chapter

   Caffrey, B.; Marsico, A.: Computational modeling of microRNA Biogenesis. In: Mathematical Models in Biology, pp. 85 - 98 (Eds. Zazzu, V.; Ferraro, M. B.). Springer International Publishing (2015)