Publications of M. Vingron
All genres
Journal Article (217)
121.
Journal Article
38 (10), p. e112 - e112 (2010)
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments. Nucleic Acids Research 122.
Journal Article
31 (4), pp. 477 - 483 (2010)
Quantifying the effect of sequence variation on regulatory interactions. Hum Mutation 123.
Journal Article
38 (4), p. e23 - e23 (2010)
A calibrated diversity assay for nucleic acid libraries using DiStRO-a Diversity Standard of Random Oligonucleotides. Nucleic Acids Research 124.
Journal Article
107 (7), pp. 2926 - 2931 (2010)
Histone modification levels are predictive for gene expression. Proceedings of the National Academy of Sciences USA 125.
Journal Article
11, p. 11:267 - 11:267 (2010)
A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes. BMC Bioinformatics 126.
Journal Article
19, pp. 2036 - 2051 (2009)
Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention. Genome Resaerch 127.
Journal Article
37 (19), pp. 6305 - 6315 (2009)
CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses. Nucleic Acids Research 128.
Journal Article
10, p. 314 - 314 (2009)
In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach. BMC Genomics 129.
Journal Article
16 (7), pp. 887 - 896 (2009)
Maximum Similarity: A New Formulation of Phylogenetic Reconstruction. Journal of Computational Biology 130.
Journal Article
5, 2009.45 (2009)
Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments. Molecular Systems Biology 131.
Journal Article
10, p. 204 - 204 (2009)
Comparison of sequence-dependent tiling array normalization approaches. BMC Bioinformatics 132.
Journal Article
25 (4), pp. 435 - 442 (2009)
PASTAA: identifying transcription factors associated with sets of co-regulated genes. Bioinformatics 133.
Journal Article
10, p. e144 - e144 (2009)
Expression profile and transcription factor binding site exploration of imprinted genes in human and mouse. BMC Genomics 134.
Journal Article
386 (5), pp. 1411 - 1422 (2009)
Sequence-dependent Nucleosome Positioning. Journal of Molecular Biology 135.
Journal Article
25 (16), pp. 2103 - 2109 (2009)
Statistical detection of cooperative transcription factors with similarity adjustment. Bioinformatics 136.
Journal Article
12 (4), pp. 418 - 427 (2009)
Paracrine control of oligodendrocyte differentiation by SRF-directed neuronal gene expression. Nature Neuroscience 137.
Journal Article
5 (2), p. e1000282 - e1000282 (2009)
Evidence for Gene-Specific Rather Than Transcription Rate–Dependent Histone H3 Exchange in Yeast Coding Regions. PLoS Computational Biology 138.
Journal Article
25 (2), pp. 63 - 66 (2009)
Methylation and deamination of CpGs generate p53-binding sites on a genomic scale. Trends in Genetics 139.
Journal Article
10 (1), p. 202 - 202 (2009)
Integrating sequence, evolution and functional genomics in regulatory genomics. Genome Biology 140.
Journal Article
9 (9), 1471-2148-9-9 (2009)
Horizontal Gene Transfers in prokaryotes show differential preferences for metabolic and translational genes. BMC Evolutionary Biology