Publications of S. M. Kielbasa

Weirauch, M. T.; Cote, A.; Norel, R.; Annala, M.; Zhao, Y.; Riley, T. R.; Saez-Rodriguez, J.; Cokelaer, T.; Vedenko, A.; Talukder, S. et al.; Consortium, D.; Agius, P.; Arvey, A.; Bucher, P.; Callan, C. G.,. J.; Chang, C. W.; Chen, C. Y.; Chen, Y. S.; Chu, Y. W.; Grau, J.; Grosse, I.; Jagannathan, V.; Keilwagen, J.; Kielbasa, S. M.; Kinney, J. B.; Klein, H.; Kursa, M. B.; Lahdesmaki, H.; Laurila, K.; Lei, C.; Leslie, C.; Linhart, C.; Murugan, A.; Mysickova, A.; Noble, W. S.; Nykter, M.; Orenstein, Y.; Posch, S.; Ruan, J.; Rudnicki, W. R.; Schmid, C. D.; Shamir, R.; Sung, W. K.; Vingron, M.; Zhang, Z.; Bussemaker, H. J.; Morris, Q. D.; Bulyk, M. L.; Stolovitzky, G.; Hughes, T. R.: Evaluation of methods for modeling transcription factor sequence specificity. Nature biotechnology 31 (2), pp. 126 - 34 (2013)

Krawitz, P. M.; Murakami, Y.; Hecht, J.; Kruger, U.; Holder, S. E.; Mortier, G. R.; Delle Chiaie, B.; De Baere, E.; Thompson, M. D.; Roscioli, T. et al.; Kielbasa, S. M.; Kinoshita, T.; Mundlos, S.; Robinson, P. N.; Horn, D.: Mutations in PIGO, a member of the GPI-anchor-synthesis pathway, cause hyperphosphatasia with mental retardation. American Journal of Human Genetics 91 (1), pp. 146 - 151 (2012)

Kielbasa, S. M.; Wan, R.; Sato, K.; Horton, P.; Frith, M. C.: Adaptive seeds tame genomic sequence comparison. Genome Res 21 (3), pp. 487 - 93 (2011)

Zemojtel, T.; Kielbasa, S. M.; Arndt, P. F.; Behrens, S.; Bourque, G.; Vingron, M.: CpG deamination creates transcription factor-binding sites with high efficiency. Genome Biol Evol 3, pp. 1304 - 11 (2011)

Kielbasa, S. M.; Bluthgen, N.; Fahling, M.; Mrowka, R.: Targetfinder.org: a resource for systematic discovery of transcription factor target genes. Nucleic Acids Research 38 Suppl, pp. W233 - W238 (2010)

Kielbasa, S. M.; Klein, H.; Roider, H. G.; Vingron, M.; Blüthgen, N.: TransFind--predicting transcriptional regulators for gene sets. Nucleic Acids Research 38 Suppl, pp. W275 - W280 (2010)

Bozek, K.; Relógio, A.; Kielbasa, S. M.; Heine, M.; Dame, C.; Kramer, A.; Herzel, H.: Regulation of Clock-Controlled Genes in Mammals. PLoS ONE 4 (3), p. e4882 - e4882 (2009)

Zemojtel, T.; Kielbasa, S. M.; Arndt, P. F.; Chung, H.-R.; Vingron, M.: Methylation and deamination of CpGs generate p53-binding sites on a genomic scale. Trends in Genetics 25 (2), pp. 63 - 66 (2009)

Kielbasa, S. M.; Vingron, M.: Transcriptional Autoregulatory Loops Are Highly Conserved in Vertebrate Evolution. PLoS One 3 (9), p. e3210 - e3210 (2008)