Publikationen von Zhike Zi

Yuchao Li, Difan Deng, Chris Tina Höfer, Jihye Kim, Won Do Heo, Quanbin Xu, Xuedong Liu, and Zhike Zi, "Liebig's law of the minimum in the TGF-β/SMAD pathway," PLOS Computational Biology 20 (5), Article e1012072 (2024).

Dan Shi, Weihua Feng, and Zhike Zi, "Machine learning unveils RNA polymerase II binding as a predictor for SMAD2-dependent transcription dynamics in response to Actvin signalling," IET Systems Biology 18 (1), 14-22 (2024).

Yuchao Li, Heeyoung Lee, Won Do Heo, and Zhike Zi, "Revisiting the Role of TGFβ Receptor Internalization for Smad Signaling: It is Not Required in Optogenetic TGFβ Signaling Systems," Advanced Biology , 2101008 (2021).

Xiaojuan Zhang, Quanbin Xu, Zhike Zi, Zeyu Liu, Chun Wan, Lauren Crisman, Jingshi Shen, and Xuedong Liu, "Programmable Extracellular Vesicles for Macromolecule Delivery and Genome Modifications," Developmental Cell 55 (6), 784-801 (2020).

Marijn T. M. van Jaarsveld, Difan Deng, Diana Ordoñez-Rueda, Malte Paulsen, Erik A. C. Wiemer, and Zhike Zi, "Cell-type-specific role of CHK2 in mediating DNA damage-induced G2 cell cycle arrest," Oncogenesis 9, 35 (2020).

Zhike Zi, "Molecular Engineering of the TGF-β Signaling Pathway," Journal of Molecular Biology (London) 431 (15), 2644-2654 (2019).

Hongqing Han, Guoyu Wu, Yuchao Li, and Zhike Zi, "eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis," iScience 13, 1-8 (2019).

Marijn van Jaarsveld, Difan Deng, Erik A. C. Wiemer, and Zhike Zi, "Tissue-Specific Chk1 Activation Determines Apoptosis by Regulating the Balance of p53 and p21," iScience 12, 27-40 (2019).

Yuchao Li, Minji Lee, Nury Kim, Guoyu Wu, Difan Deng, Jin Man Kim, Xuedong Liu, Won Do Heo, and Zhike Zi, "Spatiotemporal Control of TGF-β Signaling with Light," ACS Synthetic Biology 7 (2), 443-451 (2018).

Xun Huang and Zhike Zi, "Inferring cellular regulatory networks with Bayesian model averaging for linear regression (BMALR)," Molecular BioSystems 10 (8), 2023-2030 (2014).

Kristoffer T. G. Rigbolt, Mostafa Zarei, Adrian Sprenger, Andrea C. Becker, Britta Diedrich, Xun Huang, Sven Eiselein, Anders R. Kristensen, Christine Gretzmeier, Jens S. Andersen, Zhike Zi, and Jörn Dengjel, "Characterization of early autophagy signaling by quantitative phosphoproteomics," Autophagy 10 (2), 356-371 (2014).

Zhike Zi, Douglas A. Chapnick, and Xuedong Liu, "Dynamics of TGF-β/Smad signaling," FEBS Letters 586 (14), 1921-1928 (2012).

Miquel Àngel Adrover, Zhike Zi, Alba Duch, Jörg Schaber, Alberto González-Novo, Javier Jimenez, Mariona Nadal-Ribelles, Josep Clotet, Edda Klipp, and Francesc Posas, "Time-dependent quantitative multicomponent control of the G1-S network by the stress-activated protein kinase Hog1 upon osmostress," Science Signaling 4 (192), ra63 (2011).

Zhike Zi, Zipei Feng, Douglas A. Chapnick, Markus Dahl, Difan Deng, Edda Klipp, Aristidis Moustakas, and Xuedong Liu, "Quantitative analysis of transient and sustained transforming growth factor-β signaling dynamics," Molecular Systems Biology 2011 (7), 7: 492 (2011).

Zhike Zi, "Sensitivity analysis approaches applied to systems biology models," IET Systems Biology 5 (6), 336-346 (2011).

Zhike Zi, "SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models," Bioinformatics 27 (7), 1028-1029 (2011).

Zhike Zi, Wolfram Liebermeister, and Edda Klipp, "A quantitative study of the Hog1 MAPK response to fluctuating osmotic stress in Saccharomyces cerevisiae," A Quantitative Study of the Hog1 MAPK Response to Fluctuating Osmotic Stress in Saccharomyces cerevisiae 5 (3), e9522 (2010).

Zhike Zi, Yanan Zheng, Ann E. Rundell, and Edda Klipp, "A systems biology markup language (SBML) based sensitivity analysis tool," BMC Bioinformatics 15 (9), 342-342 (2008).

Zhike Zi and Edda Klipp, "Cellular signaling is potentially regulated by cell density in receptor trafficking networks," FEBS Letters 581 (24), 4589-4595 (2007).

Zhike Zi and Edda Klipp, "Constraint-based modeling and kinetic analysis of the smad dependent TGF-ß signaling pathway," PLoS One 2 (9), e936-e936 (2007).