Publications of Juliane Dohm

Dohm, J.; Minoche, A. E.; Holtgräwe, D.; Capella-Gutiérrez, S.; Zakrzewski, F.; Tafer, H.; Rupp, O.; Rosleff Sörensen, T.; Stracke, R.; Reinhardt, R. et al.; Goesmann, A.; Kraft, T.; Schulz, B.; Stadler, P.; Schmidt, T.; Gabaldón, T.; Lehrach, H.; Weisshaar, B.; Himmelbauer, H.: The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature 505 (7484), pp. 546 - 549 (2014)

Dohm, J. C.; Minoche, A. E.; Holtgräwe, D.; Capella-Gutierrez, S.; Zakrzewski, F.; Tafer, H.; Rupp, O.; Sorensen, T. R.; Stracke, R.; Reinhardt, R. et al.; Goesmann, A.; Kraft, T.; Schulz, B.; Stadler, P. F.; Schmidt, T.; Gabaldon, T.; Lehrach, H.; Weisshaar, B.; Himmelbauer, H.: The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). Nature 505 (7484), pp. 546 - 549 (2014)

Wollrab, C.; Heitkam, T.; Holtgrawe, D.; Weisshaar, B.; Minoche, A. E.; Dohm, J. C.; Himmelbauer, H.; Schmidt, T.: Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome. The Plant Journal 72 (4), pp. 636 - 51 (2012)

Pin, P. A.; Zhang, W.; Vogt, S. H.; Dally, N.; Büttner, B.; Schulze-Buxloh, G.; Jelly, N. S.; Chia, T. Y.P.; Mutasa-Gottgens, E. S.; Dohm, J. C. et al.; Himmelbauer, H.; Weisshaar, B.; Kraus, J.; Gielen, J. J.L.; Lommel, M.; Weyens, G.; Wahl, B.; Schechert, A.; Nilsson, O.; Jung, C.; Kraft, T.; Müller, A. E.: The role of a pseudo-response regulator gene in life cycle adaptation and domestication of beet. Current Biology 22 (12), pp. 1095 - 1101 (2012)

Berndt, H.; Harnisch, C.; Rammelt, C.; Stohr, N.; Zirkel, A.; Dohm, J. C.; Himmelbauer, H.; Tavanez, J. P.; Hüttelmaier, S.; Wahle, E.: Maturation of mammalian H/ACA box snoRNAs: PAPD5-dependent adenylation and PARN-dependent trimming. RNA-A Publication of the RNA Society 18 (5), pp. 958 - 972 (2012)

Dohm, J. C.; Lange, C.; Holtgräwe, D.; Sörensen, T. R.; Borchardt, D.; Schulz, B.; Lehrach, H.; Weisshaar, B.; Himmelbauer, H.: Palaeohexaploid ancestry for Caryophyllales inferred from extensive gene-based physical and genetic mapping of the sugar beet genome (Beta vulgaris). The Plant Journal 70 (3), pp. 528 - 540 (2012)

Menzel, G.; Krebs, C.; Diez, M.; Holtgrawe, D.; Weisshaar, B.; Minoche, A. E.; Dohm, J. C.; Himmelbauer, H.; Schmidt, T.: Survey of sugar beet (Beta vulgaris L.) hAT transposons and MITE-like hATpin derivatives. Plant Molecular Biology 78 (4-5), pp. 393 - 405 (2012)

Tsend-Ayush, E.; Kortschak, R. D.; Bernard, P.; Lim, S. L.; Ryan, J.; Rosenkranz, R.; Borodina, T.; Dohm, J. C.; Himmelbauer, H.; Harley, V. R. et al.; Grützner, F.: Identification of mediator complex 26 (Crsp7) gametologs on platypus X1 and Y5 sex chromosomes: a candidate testis-determining gene in monotremes? Chromosome Research 20 (1), pp. 127 - 138 (2012)

Dohm, J. C.; Lange, C.; Holtgrawe, D.; Rosleff Sorensen, T.; Borchardt, D.; Schulz, B.; Lehrach, H.; Weisshaar, B.; Himmelbauer, H.: Palaeohexaploid Ancestry for Caryophyllales Inferred from Extensive Gene-Based Physical and Genetic Mapping of the Sugar Beet Genome (Beta vulgaris). The Plant Journal: for Cell and Molecular Biology (2011)

Llorens, F.; Hummel, M.; Pastor, X.; Ferrer, A.; Pluvinet, R.; Vivancos, A.; Castillo, E.; Iraola, S.; Mosquera, A. M.; Gonzalez, E. et al.; Lozano, J.; Ingham, M.; Dohm, J. C.; Noguera, M.; Kofler, R.; del Rio, J. A.; Bayes, M.; Himmelbauer, H.; Sumoy, L.: Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis. BMC Genomics 12, p. 326 (2011)

Minoche, A. E.; Dohm, J. C.; Himmelbauer, H.: Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems. Genome Biology 12 (11), p. R112 (2011)

Puente, X. S.; Pinyol, M.; Quesada, V.; Conde, L.; Ordonez, G. R.; Villamor, N.; Escaramis, G.; Jares, P.; Bea, S.; Gonzalez-Diaz, M. et al.; Bassaganyas, L.; Baumann, T.; Juan, M.; Lopez-Guerra, M.; Colomer, D.; Tubio, J. M.; Lopez, C.; Navarro, A.; Tornador, C.; Aymerich, M.; Rozman, M.; Hernandez, J. M.; Puente, D. A.; Freije, J. M.; Velasco, G.; Gutierrez-Fernandez, A.; Costa, D.; Carrio, A.; Guijarro, S.; Enjuanes, A.; Hernandez, L.; Yague, J.; Nicolas, P.; Romeo-Casabona, C. M.; Himmelbauer, H.; Castillo, E.; Dohm, J. C.; de Sanjose, S.; Piris, M. A.; de Alava, E.; San Miguel, J.; Royo, R.; Gelpi, J. L.; Torrents, D.; Orozco, M.; Pisano, D. G.; Valencia, A.; Guigo, R.; Bayes, M.; Heath, S.; Gut, M.; Klatt, P.; Marshall, J.; Raine, K.; Stebbings, L. A.; Futreal, P. A.; Stratton, M. R.; Campbell, P. J.; Gut, I.; Lopez-Guillermo, A.; Estivill, X.; Montserrat, E.; Lopez-Otin, C.; Campo, E.: Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia. Nature 475 (7354), pp. 101 - 5 (2011)

Zakrzewski, F.; Weisshaar, B.; Fuchs, J.; Bannack, E.; Minoche, A. E.; Dohm, J. C.; Himmelbauer, H.; Schmidt, T.: Epigenetic profiling of heterochromatic satellite DNA. Chromosoma 120 (4), pp. 409 - 22 (2011)

Vivancos, A. P.; Guell, M.; Dohm, J. C.; Serrano, L.; Himmelbauer, H.: Strand-specific deep sequencing of the transcriptome. Genome Research 20 (7), pp. 989 - 999 (2010)

Lange, C.; Mittermayr, L.; Dohm, J. C.; Holtgräwe, D.; Weisshaar, B.; Himmelbauer, H.: High-throughput identification of genetic markers using representational oligonucleotide microarray analysis. Theoretical and Applied Genetics 121 (3), pp. 549 - 565 (2010)

Dohm, J. C.; Lange, C.; Reinhardt, R.; Himmelbauer, H.: Haplotype divergence in Beta vulgaris and microsynteny with sequenced plant genomes. Plant Journal 57 (1), pp. 14 - 26 (2009)

Dohm, J. C.; Lottaz, C.; Borodina, T.; Himmelbauer, H.: Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Research 36 (16), p. e105 - e105 (2008)

Dohm, J. C.; Lottaz, C.; Borodina, T.; Himmelbauer, H.: SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. Genome Research 17 (11), pp. 1697 - 1706 (2007)

Dohm, J. C.; Tsend-Ayush, E.; Reinhardt, R.; Grützner, F.; Himmelbauer, H.: Disruption and pseudoautosomal localization of the major histocompatibility complex in monotremes. Genome Biology 8 (8), p. R 175 - R 175 (2007)

Dohm, J. C.; Tsend-Ayush, E.; Reinhardt, R.; Grützner, F.; Himmelbauer, H.: Disruption and pseudoautosomal localization of the major histocompatibility complex in monotremes. Genome Biology 8 (8), p. R 175 - R 175 (2007)