Melo Costa, V. R.; Pfeuffer, J.; Louloupi, A.; Ørom, U. A. V.; Piro, R. M.: SPLICE-q: aPython tool for genome-wide quantification of splicing efficiency. BMC Bioinformatics 22 (1), 368 (2021)

Iannuzzi, S.; von Kleist, M.: Mathematical Modelling of the Molecular Mechanisms of Interaction of Tenofovir with Emtricitabine against HIV. Viruses 13 (7), 1354 (2021)

Labarde, A.; Jakutyte, L.; Billaudeau, C.; Fauler, B.; López-Sanz, M.; Ponien, P.; Jacquet, E.; Mielke, T.; Ayora, S.; Carballido-López, R. et al.; Tavares, P.: Temporal compartmentalization of viral infection in bacterial cells. Proceedings of the National Academy of Sciences of the United States of America 118 (28), e2018297118 (2021)

Mischke, R.; Metzger, J.; Distl, O.: An FGA Frameshift Variant Associated with Afibrinogenemia in Dachshunds. Genes 12 (7), 1065 (2021)

Huang, T.-W.; Iyer, A. A.; Manalo, J. M.; Woo, J.; Bosquez Huerta, N. A.; McGovern, M. M.; Schrewe, H.; Pereira, F. A.; Groves, A. K.; Ohlemiller, K. K. et al.; Deneen, B.: Glial-Specific Deletion of Med12 Results in Rapid Hearing Loss via Degradation of the Stria Vascularis. The Journal of Neuroscience 41 (34), pp. 7171 - 7181 (2021)

Abdullaev, E.; Umarova, I. R.; Arndt, P. F.: Modelling segmental duplications in the human genome. BMC Genomics 22 (1), Article 496 (2021)

Haggerty, C.; Kretzmer, H.; Riemenschneider, C.; Sampath Kumar, A.; Mattei, A. L.; Bailly, N.; Gottfreund, J.; Giesselmann, P.; Weigert, R.; Brändl, B. et al.; Giehr, P.; Buschow, R.; Galonska, C.; von Meyenn, F.; Pappalardi, M. B.; McCabe, M. T.; Wittler, L.; Giesecke-Thiel, C.; Mielke, T.; Meierhofer, D.; Timmermann, B.; Müller, F.-J.; Walter, J.; Meissner, A.: Dnmt1 has de novo activity targeted to transposable elements. Nature Structural and Molecular Biology 28 (7), pp. 594 - 603 (2021)

Witte, F.; Ruiz-Orera, J.; Ciolli Mattioli, C.; Blachut, S.; Adami, E.; Schulz, J. F.; Schneider-Lunitz, V.; Hummel, O.; Patone, G.; Mücke, M. B. et al.; Šilhavý, J.; Heinig, M.; Bottolo, L.; Sanchis, D.; Vingron, M.; Chekulaeva, M.; Pravenec, M.; Hubner, N.; van Heesch, S.: A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length-dependent fashion. Genome Biology 22 (1), 191 (2021)

Bauer, C.; Herwig, R.; Lienhard, M.; Prasse, P.; Scheffer, T.; Schuchhardt, J.: Large-scale literature mining to assess the relation between anti-cancer drugs and cancer types. Journal of Translational Medicine 19, Article 274 (2021)

Seiler, E.; Mehringer, S.; Darvish, M.; Turc, E.; Reinert, K.: Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences. iScience 24 (7), 102782 (2021)

Jaworski, P.; Zyla-Uklejewicz, D.; Nowaczyk-Cieszewska, M.; Donczew, R.; Mielke, T.; Weigel, C.; Zawilak-Pawlik, A.: Putative Cooperative ATP-DnaA Binding to Double-Stranded DnaA Box and Single-Stranded DnaA-Trio Motif upon Helicobacter pylori Replication Initiation Complex Assembly. International Journal of Molecular Sciences 22 (12), 6643 (2021)

Pacini, G.; Dunkel, I.; Mages, N.; Mutzel, V.; Timmermann, B.; Marsico, A.; Schulz, E. G.: Integrated analysis of Xist upregulation and X-chromosome inactivation with single-cell and single-allele resolution. Nature Communications 12 (1), 3638 (2021)

Sheinman, M.; Arkhipova, K.; Arndt, P. F.; Dutilh, B. E. ..; Hermsen, R.; Massip, F.: Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain. eLife 10, Article e62719 (2021)

Bolondi, A.; Haut, L.; Gassaloglu, S. I.; Burton, P.; Kretzmer, H.; Buschow, R.; Meissner, A.; Herrmann, B. G.; Veenvliet, J. V.: Generation of Mouse Pluripotent Stem Cell-derived Trunk-like Structures: An in vitro Model of Post-implantation Embryogenesis. Bio-protocol 11 (11), e4042 (2021)

Cichońska, A.; Ravikumar, B.; Allaway, R. J.; Wan, F.; Park, S.; Isayev, O.; Li, S.; Mason, M.; Lamb, A.; Tanoli, Z. et al.; Jeon, M.; Kim, S.; Popova, M.; Capuzzi, S.; Zeng, J.; Dang, K.; Koytiger, G.; Kang, J.; Wells, C. I.; Willson, T. M.; Lienhard, M.; Prasse, P.; Bachmann, I.; Ganzlin, J.; Barel, G.; Herwig, R.; Oprea, T. I.; Schlessinger, A.; Drewry, D. H.; Stolovitzky, G.; Wennerberg, K.; Guinney, J.; Aittokallio, T.: Crowdsourced mapping of unexplored target space of kinase inhibitors. Nature Communications 12 (1), Article 3307 (2021)

Adane, B.; Alexe, G.; Seong, B. K. A.; Lu, D.; Hwang, E. E.; Hnisz, D.; Lareau, C. A.; Ross, L.; Lin, S.; Dela Cruz, F. S. et al.; Richardson, M.; Weintraub, A. S.; Wang, S.; Balboni Iniguez, A.; Dharia, N. V.; Saur Conway, A.; Robichaud, A. L.; Tanenbaum, B.; Krill-Burger, J. M.; Vazquez, F.; Schenone, M.; Berman, J. N.; Kung, A. L.; Carr, S. A.; Aryee, M. J.; Young, R. A.; Crompton, B. D.; Stegmaier, K.: STAG2 loss rewires oncogenic and developmental programs to promote metastasis in Ewing sarcoma. Cancer Cell 39 (6), pp. 827 - 844 (2021)

Beyter, D.; Ingimundardottir, H.; Oddsson, A.; Eggertsson, H. P.; Bjornsson, E.; Jonsson, H.; Atlason, B. A.; Kristmundsdottir, S.; Mehringer, S.; Hardarson, M. T. et al.; Gudjonsson, S. A.; Magnusdottir, D. N.; Jonasdottir, A.; Jonasdottir, A.; Kristjansson, R. P.; Sverrisson, S. T.; Holley, G.; Palsson, G.; Stefansson, O. A.; Eyjolfsson, G.; Olafsson, I.; Sigurdardottir, O.; Torfason, B.; Masson, G.; Helgason, A.; Thorsteinsdottir, U.; Holm, H.; Gudbjartsson, D. F.; Sulem, P.; Magnusson, O. T.; Halldorsson, B. V.; Stefansson, K.: Long-read sequencing of 3,622 Icelanders provides insight into the role of structural variants in human diseases and other traits. Nature Genetics 53 (6), pp. 779 - 786 (2021)

Rehman, S. U.; Schallschmidt, T.; Rasche, A.; Knebel, B.; Stermann, T.; Altenhofen, D.; Herwig, R.; Schürmann, A.; Chadt, A.; Al‑Hasani, H.: Alternative exon splicing and differential expression in pancreatic islets reveals candidate genes and pathways implicated in early diabetes development. Mammalian Genome 32 (3), pp. 153 - 172 (2021)

Veenvliet, J. V.; Herrmann, B. G.: Modeling mammalian trunk development in a dish. Developmental Biology 474, pp. 5 - 15 (2021)

Jax, E.; Mueller, I.; Börno, S.; Borlinghaus, H.; Eriksson, G.; Fricke, E.; Timmermann, B.; Pendl, H.; Fiedler, W.; Klein, K. et al.; Schreiber, F.; Wikelski, M.; Magor, K. E.; Kraus, R. H. S.: Health monitoring in birds using bio‑loggers and whole blood transcriptomics. Scientific Reports 11, 10815 (2021)