Current Position
Imperial College
Faculty of Medicine, School of Public Health
Charing Cross Campus, London SW7 2AZ, UK
www.imperial.ac.uk/people/u.pape
Education
- College / University
- 1999 - 2000 Technical University of Dresden
- 2000 - 2001 Eberhards Karl Univerity of Tübingen
- 2001 - 2004 Free University of Berlin
- Degrees
- M.Sc. (Bioinformatics, 2004)
- Intermediate Diploma (Philosophy, 2004)
- B.Sc. (Bioinformatics, 2003)
- Projects / Research
- 2006 Count Statistic for Position Frequency Matrices (PFMs), University of Southern Californa, Molecular Computational Biology, Los Angeles, USA.
- 2004 "Prediction of Lignification Genes in Arabidopsis by Comparative Genomics", VIB Plant Systems Biology, Ghent, Belgium.
- 2003 "Analysis of Microarray Time Course Data from Floral Knockouts of Arabidopsis", Max-Planck-Institute for Molecular Genetics, Berlin, Germany, and Max-Planck-Institute for Developmental Biology, Tübingen, Germany.
Dissertation
- Submitted in August 2008
- Statistics for Transcription Factor Binding Sites
Publications from time as IMPRS fellow
- Pape, U.J., Klein, H., Vingron, M. (2009)
Statistical detection of co-operative transcription factors with similarity adjustment.
Bioinformatics 25 (16): 2103-9 - Pape, U.J., Vingron, M. (2008)
Statistics for Co-Occurrence of DNA Motifs.
Proc. of the International Workshop for Applied Probability (IWAP), 2008. - Pape, U.J., Rahmann, S., Sun, F., Vingron, M.
Compound Poisson approximation of the number of occurrences of a position frequency matrix (PFM) on both strands.
Journal of Computational Biology 15 (6): 547-64 - Toenjes, M., Schueler, M., Hammer, S., Pape, U.J., Fischer, J.J., Berger, F., Vingron , M., Sperling, S.
Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes.
Molecular BioSystems, 4 (6): 589-98. - Pape, U.J., Rahmann, S., Vingron, M.
Natural Similarity Measures between Position Frequency Matrices with an Application to Clustering.
Bioinformatics, 24 (3): 350-357. - Utz J. Pape, Steffen Grossmann, Stefanie Hammer, Silke Sperling and Martin Vingron (2006).
A new statistical model to select target sequences bound by transcription factors.
Genome Informatics 17 (1): 134-40 - Markus Schmid, Timothy S. Davison, Stefan R. Henz, Utz J. Pape, Monika Demar, Martin Vingron, Bernhard Schölkopf, Detlef Weigel and Jan U. Lohmann (2005).
A gene expression map of Arabidopsis thaliana development.
Nature Genetics 37 (5): 501-5. - Pape, U.J., Rombaults, S., Sterck, L., Boerjan, W., Van de Peer, Y., and Vingron, M. (2005)
Prediction of Genes involved in Lignification.
Proceedings of the 4th Bioinformatics Research and Education Workshop (BREW 2005)