Current Position

Imperial College

Faculty of Medicine, School of Public Health

Charing Cross Campus, London SW7 2AZ, UK


  • College / University
    • 1999 - 2000 Technical University of Dresden
    • 2000 - 2001 Eberhards Karl Univerity of Tübingen
    • 2001 - 2004 Free University of Berlin
  • Degrees
    • M.Sc. (Bioinformatics, 2004)
    • Intermediate Diploma (Philosophy, 2004)
    • B.Sc. (Bioinformatics, 2003)
  • Projects / Research
    • 2006 Count Statistic for Position Frequency Matrices (PFMs), University of Southern Californa, Molecular Computational Biology, Los Angeles, USA.
    • 2004 "Prediction of Lignification Genes in Arabidopsis by Comparative Genomics", VIB Plant Systems Biology, Ghent, Belgium.
    • 2003 "Analysis of Microarray Time Course Data from Floral Knockouts of Arabidopsis", Max-Planck-Institute for Molecular Genetics, Berlin, Germany, and Max-Planck-Institute for Developmental Biology, Tübingen, Germany.


Publications from time as IMPRS fellow

  • Pape, U.J., Klein, H., Vingron, M. (2009)
    Statistical detection of co-operative transcription factors with similarity adjustment.
    Bioinformatics 25 (16): 2103-9
  • Pape, U.J., Vingron, M. (2008)
    Statistics for Co-Occurrence of DNA Motifs.
    Proc. of the International Workshop for Applied Probability (IWAP), 2008.
  • Pape, U.J., Rahmann, S., Sun, F., Vingron, M.
    Compound Poisson approximation of the number of occurrences of a position frequency matrix (PFM) on both strands.
    Journal of Computational Biology 15 (6): 547-64
  • Toenjes, M., Schueler, M., Hammer, S., Pape, U.J., Fischer, J.J., Berger, F., Vingron , M., Sperling, S.
    Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes.
    Molecular BioSystems, 4 (6): 589-98.
  • Pape, U.J., Rahmann, S., Vingron, M.
    Natural Similarity Measures between Position Frequency Matrices with an Application to Clustering.
    Bioinformatics, 24 (3): 350-357.
  • Utz J. Pape, Steffen Grossmann, Stefanie Hammer, Silke Sperling and Martin Vingron (2006).
    A new statistical model to select target sequences bound by transcription factors.
    Genome Informatics 17 (1): 134-40
  • Markus Schmid, Timothy S. Davison, Stefan R. Henz, Utz J. Pape, Monika Demar, Martin Vingron, Bernhard Schölkopf, Detlef Weigel and Jan U. Lohmann (2005).
    A gene expression map of Arabidopsis thaliana development.
    Nature Genetics 37 (5): 501-5.
  • Pape, U.J., Rombaults, S., Sterck, L., Boerjan, W., Van de Peer, Y., and Vingron, M. (2005)
    Prediction of Genes involved in Lignification.
    Proceedings of the 4th Bioinformatics Research and Education Workshop (BREW 2005)
Go to Editor View