Publications of the Chung lab
Journal Article (44)
1.
Journal Article
13 (1), Article 20 (2020)
EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications. Epigenetics & Chromatin 2.
Journal Article
9 (1), 19063 (2019)
Altered microRNA and target gene expression related to Tetralogy of Fallot. Scientific Reports 3.
Journal Article
33 (7-8), pp. 452 - 465 (2019)
The NSL complex-mediated nucleosome landscape is required to maintain transcription fidelity and suppression of transcription noise. Genes and Development 4.
Journal Article
14 (8), e1006372 (2018)
coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers. PLoS Computational Biology 5.
Journal Article
46 (6), pp. 2868 - 2882 (2018)
Genomic dissection of enhancers uncovers principles of combinatorial regulation and dynamic wiring of enhancer-promoter contacts. Nucleic Acids Research (London) 6.
Journal Article
86 (4), pp. 184 - 195 (2017)
Stochastics of Cellular Differentiation Explained by Epigenetics: The Case of T-Cell Differentiation and Functional Plasticity. Scand J Immunol 7.
Journal Article
2017 (3), pp. 696 - 703 (2017)
Haplotype-resolved sweet potato genome traces back its hexaploidization history. Nature Plants 8.
Journal Article
8 (2), pp. 106 - 112 (2017)
PHF13: A new player involved in RNA polymerase II transcriptional regulation and co-transcriptional splicing. Transcription 9.
Journal Article
7, 7:12514 (2016)
reChIP-seq reveals widespread bivalency of H3K4me3 and H3K27me3 in CD4+ memory T-Cells. Nature Communications 10.
Journal Article
5, 5:e10607 (2016)
PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3. eLife 11.
Journal Article
14 (5), pp. 1246 - 1257 (2016)
Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs. Cell Reports 12.
Journal Article
15 (7), fov073 (2015)
A link between Sas2-mediated H4 K16 acetylation, chromatin assembly in S-phase by CAF-I and Asf1, and nucleosome assembly by Spt6 during transcription. FEMS Yeast Research 13.
Journal Article
60 (1), pp. 146 - 162 (2015)
High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila. Molecular Cell 14.
Journal Article
33 (9), pp. 933 - 940 (2015)
Prediction of human population responses to toxic compounds by a collaborative competition. Nat Biotechnol 15.
Journal Article
25 (6), pp. 825 - 835 (2015)
ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors. Genome Res 16.
Journal Article
16, 16:151 (2015)
Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome. Genome Biology 17.
Journal Article
42 (22), pp. 13689 - 13695 (2014)
Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling. Nucleic Acids Research (London) 18.
Journal Article
15, 15:423 (2014)
Deletions of chromosomal regulatory boundaries are associated with congenital disease. Genome Biology: Biology for the Post-Genomic Era 19.
Journal Article
103 (Suppl 1), S 1 (2014)
5Regulation of myogenesis via kinase driven activation of DPF3a, a BAF complex member and its interaction with transcription repressor HEY1. Cardiovascular Research 20.
Journal Article
23 (12), pp. 3115 - 3128 (2014)
Rare and Private Variations in Neural Crest, Apoptosis and Sarcomere Genes Define the Polygenic Background of Isolated Tetralogy of Fallot. Human Molecular Genetics