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Journal Article (24)

1.
Journal Article
Lam, K. C.; Chung, H.-R.; Semplicio, G.; Iyer, S. S.; Gaub, A.; Bhardwaj, V.; Holz, H.; Georgiev, P.; Akhtar, A.: The NSL complex-mediated nucleosome landscape is required to maintain transcription fidelity and suppression of transcription noise. Genes and Development 33 (7-8), pp. 452 - 465 (2019)
2.
Journal Article
van Bömmel, A.; Love, M. I.; Chung, H.-R.; Vingron, M.: coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers. PLoS Computational Biology 14 (8), e1006372 (2018)
3.
Journal Article
Thormann, V.; Rothkegel, M. C.; Schöpflin, R.; Glaser, L. V.; Djuric, P.; Li, N.; Chung, H.-R.; Schwahn, K.; Vingron, M.; Meijsing, S.: Genomic dissection of enhancers uncovers principles of combinatorial regulation and dynamic wiring of enhancer-promoter contacts. Nucleic Acids Research (London) 46 (6), pp. 2868 - 2882 (2018)
4.
Journal Article
Chung, H.-R.; Xu, C.; Fuchs, A.; Mund, A.; Lange, M.; Staege, H.; Schubert, T.; Bian, C.; Dunkel, I.; Eberharter, A. et al.; Regnard, C.; Klinker, H.; Meierhofer, D.; Cozzuto, L.; Winterpracht, A.; Di Croce, L.; Min, J.; Will, H.; Kinkley, S.: PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3. eLife 5, 5:e10607 (2016)
5.
Journal Article
Juan, D.; Perner, J.; Carrillo de Santa Pau, E.; Marsili, S.; Ochoa, D.; Chung, H. R.; Vingron, M.; Rico, D.; Valencia, A.: Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs. Cell Reports 14 (5), pp. 1246 - 1257 (2016)
6.
Journal Article
Reiter, C.; Heise, F.; Chung, H.-R.; Ehrenhofer-Murray, A. E.: A link between Sas2-mediated H4 K16 acetylation, chromatin assembly in S-phase by CAF-I and Asf1, and nucleosome assembly by Spt6 during transcription. FEMS Yeast Research 15 (7), fov073 (2015)
7.
Journal Article
Ramirez, F.; Lingg, T.; Toscano, S.; Lam, K. C.; Georgiev, P.; Chung, H. R.; Lajoie, B. R.; de Wit, E.; Zhan, Y.; de Laat, W. et al.; Dekker, J.; Manke, T.; Akhtar, A.: High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila. Molecular Cell 60 (1), pp. 146 - 162 (2015)
8.
Journal Article
Starick, S. R.; Ibn-Salem, J.; Jurk, M.; Hernandez, C.; Love, M. I.; Chung, H.-R.; Vingron, M.; Thomas-Chollier, M.; Meijsing, S. H.: ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors. Genome Res 25 (6), pp. 825 - 835 (2015)
9.
Journal Article
Mammana, A.; Chung, H.-R.: Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome. Genome Biology 16, 16:151 (2015)
10.
Journal Article
Perner, J.; Lasserre, J.; Kinkley, S.; Vingron, M.; Chung, H.-R.: Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling. Nucleic Acids Research (London) 42 (22), pp. 13689 - 13695 (2014)
11.
Journal Article
Ibn-Salem, J.; Köhler, S.; Love, M. I.; Chung, H.-R.; Huang, N.; Hurles, M. E.; Haendel, M.; Washington, N. L.; Smedley, D.; Mungall, C. J. et al.; Lewis, S. E.; Ott, C. E.; Bauer, S.; Schofield, P. N.; Mundlos, S.; Spielmann, M.; Robinson, P. N.: Deletions of chromosomal regulatory boundaries are associated with congenital disease. Genome Biology: Biology for the Post-Genomic Era 15, 15:423 (2014)
12.
Journal Article
Perner, J.; Chung, H. R.: Chromatin signaling and transcription initiation. Frontiers in Life Science 7 (1-2), pp. 22 - 30 (2013)
13.
Journal Article
Mammana, A.; Vingron, M.; Chung, H.-R.: Inferring nucleosome positions with their histone mark annotation from ChIP data. Bioinformatics 29 (20), pp. 2547 - 2554 (2013)
14.
Journal Article
Lasserre, J.; Chung, H.-R.; Vingron, M.: Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks. PLoS Computational Biology 9 (9), p. e1003168 - e1003168 (2013)
15.
Journal Article
Heise, F.; Chung, H.-R.; Weber, J. M.; Xu, Z.; Klein-Hitpass, L.; Steinmetz, L. M.; Vingron, M.; Ehrenhofer-Murray, A. E.: Genome-wide H4 K16 acetylation by SAS-I is deposited independently of transcription and histone exchange. Nucleic Acids Research (London) 40 (1), pp. 65 - 74 (2012)
16.
Journal Article
Sun, R.; Love, M.; Zemojtel, T.; Emde, A.-K.; Chung, H.-R.; Vingron, M.; Haas, S.: Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads. Bioinformatics 28 (7), pp. 1024 - 1025 (2012)
17.
Journal Article
Chung, H.-R.; Dunkel, I.; Heise, F.; Linke, C.; Krobitsch, S.; Ehrenhofer-Murray, A. E.; Sperling, S. R.; Vingron, M.: The effect of MNase on nucleosome positioning data. PLoS ONE 5 (12), p. e15754 - e15754 (2010)
18.
Journal Article
Löhr, U.; Chung, H. R.; Beller, M.; Jäckle, H.: Bicoid: Morphogen function revisited. Fly (Austin) 4 (3), pp. 236 - 240 (2010)
19.
Journal Article
Karlic, R.; Chung, H. R.; Lasserre, J.; Vlahovicek, K.; Vingron, M.: Histone modification levels are predictive for gene expression. Proceedings of the National Academy of Sciences USA 107 (7), pp. 2926 - 2931 (2010)
20.
Journal Article
Löhr, U.; Chung, H.-R.; Beller, M.; Jäckle, H.: Antagonistic action of Bicoid and the repressor Capicua determines the spatial limits of Drosophila head gene expression domains. Proceedings of the National Academy of Sciences of the United States of America 106 (51), pp. 21695 - 21700 (2009)
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