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Journal Article (40)

21.

MPG.PuRe

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publisher-version

Journal Article
Sun, R.; Love, M.; Zemojtel, T.; Emde, A.-K.; Chung, H.-R.; Vingron, M.; Haas, S.: Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads. Bioinformatics 28 (7), pp. 1024 - 1025 (2012)
22.

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publisher-version

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Schlesinger, J.; Schueler, M.; Grunert, M.; Fischer, J. J.; Zhang, Q.; Krueger, T.; Lange, M.; Tönjes, M.; Dunkel, I.; Sperling, S.: The Cardiac Transcription Network Modulated by Gata4, Mef2a, Nkx2.5, Srf, Histone Modifications, and MircoRNAs. PLoS Genetics 7 (2) (2011)
23.

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Chung, H.-R.; Dunkel, I.; Heise, F.; Linke, C.; Krobitsch, S.; Ehrenhofer-Murray, A. E.; Sperling, S. R.; Vingron, M.: The effect of MNase on nucleosome positioning data. PLoS ONE 5 (12), p. e15754 - e15754 (2010)
24.

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Löhr, U.; Chung, H. R.; Beller, M.; Jäckle, H.: Bicoid: Morphogen function revisited. Fly (Austin) 4 (3), pp. 236 - 240 (2010)
25.

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Qiu, W.; Hu, Y.; Andersen, T. E.; Jafari, A.; Li, N.; Wei Chen, W. C.; Kassem, M.: Tumor necrosis factor receptor superfamily member 19 (TNFRSF19) regulates differentiation fate of human mesenchymal (stromal) stem cells through canonical Wnt signalling and C/EBP. The Journal of Biological Chemistry 285 (19), pp. 14438 - 14449 (2010)
26.

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Schlesinger, J.; Tönjes, M.; Schueler, M.; Zhang, Q.; Dunkel, I.; Sperling, S. R.: Evaluation of the LightCycler(R) 1536 Instrument for high-throughput quantitative real-time PCR. Methods 50 (4), pp. S19 - S22 (2010)
27.

MPG.PuRe

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Schlesinger, J.; Tönjes, M.; Schueler, M.; Zhang, Q.; Dunkel, I.; Sperling, S. R.: Evaluation of the LightCycler(R) 1536 Instrument for high-throughput quantitative real-time PCR. Methods 50 (4), pp. S19 - S22 (2010)
28.

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Karlic, R.; Chung, H. R.; Lasserre, J.; Vlahovicek, K.; Vingron, M.: Histone modification levels are predictive for gene expression. Proceedings of the National Academy of Sciences USA 107 (7), pp. 2926 - 2931 (2010)
29.

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Löhr, U.; Chung, H.-R.; Beller, M.; Jäckle, H.: Antagonistic action of Bicoid and the repressor Capicua determines the spatial limits of Drosophila head gene expression domains. Proceedings of the National Academy of Sciences of the United States of America 106 (51), pp. 21695 - 21700 (2009)
30.

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Stoeckius, M.; Maaskola, J.; Colombo, T.; Rahn, H.-P.; Friedländer, M. R.; Li, N.; Chen, W.; Piano, F.; Rajewsky, N.: Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression. Nature Methods 6, pp. 745 - 751 (2009)
31.

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Chung, H.-R.; Vingron, M.: Comparison of sequence-dependent tiling array normalization approaches. BMC Bioinformatics 10, p. 204 - 204 (2009)
32.

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Chung, H.-R.; Vingron, M.: Sequence-dependent Nucleosome Positioning. Journal of Molecular Biology 386 (5), pp. 1411 - 1422 (2009)
33.

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Zemojtel, T.; Kielbasa, S. M.; Arndt, P. F.; Chung, H.-R.; Vingron, M.: Methylation and deamination of CpGs generate p53-binding sites on a genomic scale. Trends in Genetics 25 (2), pp. 63 - 66 (2009)
34.

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Lange, M.; Kaynak, B.; Forster, U. B.; Tönjes, M.; Fischer, J. J.; Grimm, C.; Schlesinger, J.; Just, S.; Dunkel, I.; Krueger, T. et al.; Mebus, S.; Lehrach, H.; Lurz, R.; Gobom, J.; Rottbauer, W.; Abdelilah-Seyfried, S.; Sperling, S.: Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex. Genes and Development 22 (17), pp. 2370 - 2384 (2008)
35.

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Lange, M.; Kaynak, B.; Forster, U. B.; Tönjes, M.; Fischer, J. J.; Grimm, C.; Schlesinger, J.; Just, S.; Dunkel, I.; Krueger, T. et al.; Mebus, S.; Lehrach, H.; Lurz, R.; Gobom, J.; Rottbauer, W.; Abdelilah-Seyfried, S.; Sperling, S.: Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex. Genes and Development 22 (17), pp. 2370 - 2384 (2008)
36.

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Hammer, S.; Toenjes, M.; Lange, M.; Fischer, J. J.; Dunkel, I.; Mebus, S.; Grimm, C. H.; Hetzer, R.; Berger, F.; Sperling, S.: Characterization of TBX20 in human hearts and its regulation by TFAP2. Journal of Cellular Biochemistry 104 (3), pp. 1022 - 1033 (2008)
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Chung, H.-R.; Kostka, D.; Vingron, M.: A physical model for tiling array analysis. Bioinformatics 23 (13), pp. i80 - i86 (2007)
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Sperling, S.; Grimm, C. H.; Dunkel, I.; Mebus, S.; Sperling, H.-P.; Ebner, A.; Galli, R.; Lehrach, H.; Fusch, C.; Berger, F. et al.; Hammer, S.: Identification and functional analysis of CITED2 mutations in patients with congenital heart defects. Human Mutation 26 (6), pp. 575 - 582 (2005)
39.

MPG.PuRe

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Heiser, V.; Engernann, S.; Brocker, W.; Dunkel, I.; Boeddrich, A.; Waelter, S.; Nordhoff, E.; Lurz, R.; Schugardt, N.; Rautenberg, S. et al.; Herhaus, C.; Barnickel, G.; Boettcher, H.; Lehrach, H.; Wanker, E. E.: Identification of benzothiazoles as potential polyglutamine aggregation inhibitors of Huntington's disease by using an automated filter retardation assay. Proceedings of the National Academy of Sciences of the United States of America 99 (Suppl. 4), pp. 16400 - 16406 (2002)
40.

MPG.PuRe

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Heiser, V.; Engemann, S.; Bröcker, W.; Dunkel, I.; Boeddrich, A.; Waelter, S.; Nordhoff, E.; Lurz, R.; Schugardt, N.; Rautenberg, S. et al.; Herhaus, C.; Barnickel, G.; Böttcher, H.; Lehrach, H.; Wanker, E. E.: Identification of benzothiazoles as potential polyglutamine aggregation inhibitors of Huntington’s disease by using an automated filter retardation assay. Self-Perpetuating Structural States in Biology, Disease, and Genetics, pp. 16400 - 16406 (2002)