The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Thesis - PhD (6)

Thesis - PhD
Dadi, T. H.: Whole Genome Shotgun Sequencing Based Taxonomic Profiling Methods for Comparative Study of Microbial Communities. Dissertation, viii, 145 pp. (2019)
MPG.PuRe
DOI
Thesis - PhD
Pockrandt, C. M.: Approximate String Matching: Improving Data Structures and Algorithms. Dissertation, 175 pp. (2019)
MPG.PuRe
DOI

Thesis - Master (6)

Thesis - Master
Bouman, B.: Primary DNA sequence as predictor for cell-type specific enhancer activity. Master (2019)
MPG.PuRe
Thesis - Master
Comak, E.: Large Structural Variations Detection in Hi-C maps. Master (2019)
MPG.PuRe
Thesis - Master
Hertzberg, J.: TAD-Aware prioritization of putative pathogenic CNV´s. Master (2019)
MPG.PuRe
Thesis - Master
Mitra, D.: Using alignment free methods for semi-quantative analysis of NGS data. Master (2019)
MPG.PuRe
Thesis - Master
Muzychenko, E.: Studying ribosomal DNA repeats in newly assembled genomes. Master (2019)
MPG.PuRe
Thesis - Master
Proft, M.: Interpreting Decisions of Deep Neural Networks to Identify Binding Preferences of Transcription Factors. Master (2019)
MPG.PuRe

Thesis - Bachelor (5)

Thesis - Bachelor
Akbari Omgba, P.: Detection and analysis of tissue-specific regulatory units based on ChIP-Seq histone modification experiments. Bachelor (2019)
MPG.PuRe
Thesis - Bachelor
Alavi, N.: Integrating pedigree information into linked-read based hapotyping for phasing structural variants. Bachelor (2019)
MPG.PuRe
Thesis - Bachelor
Fadakar, S.: Development and Implementation of R-CODE for finding Condition-Specific. Bachelor (2019)
MPG.PuRe
Thesis - Bachelor
Steiger, M.: Comparative motif enrichment analysis of experimentally identified active enhancers in mouse embryonic stem cells. Bachelor (2019)
MPG.PuRe
Thesis - Bachelor
Vogler, P.: Evaluation Scaffolding based on long sequence reads – Haplotype aided scaffolging of hexaploid genomes. Bachelor (2019)
MPG.PuRe

Other (1)

Other
Bridavsky, M.; Kuhl, H.; Woodruff, A.; Kornak, U.; Timmermann, B.; Mages, N.; 99 Lives Consortium; Lupiáñez, D. G.; Symmons, O.; Ibrahim, D. M.: Crowdfunded whole-genome sequencing of the celebrity cat Lil BUB identifies causal mutations for her osteopetrosis and polydactyly, bioRxiv: the preprint server for biology, (2019)
MPG.PuRe
DOI
pre-print

Preprint (3)

Preprint
Lammel, D. R.; Meierhofer, D.; Johnston, P.; Mbedi, S.; Rillig, M. C.: The effects of arbuscular mycorrhizal fungi (AMF) and Rhizophagus irregularis on soil microorganisms assessed by metatranscriptomics and metaproteomics. bioRxiv (2019)
MPG.PuRe
DOI
pre-print
Preprint
Christensen, S.; Van der Roest, B.; Besselink, N.; Janssen, R.; Boymans, S.; Martens, J.; Yaspo, M.-L.; Priestley, P.; Kuijk, E.; Cuppen, E. et al.; Van Hoeck, A.: 5-Fluorouracil treatment induces characteristic T>G mutations in human cancer. Nature Communications 10, Article 4571, p. 1 (2019)
MPG.PuRe
DOI
publisher-version
Preprint
Despang, A.; Schöpflin, R.; Franke, M.; Ali, S.; Jerkovic, I.; Paliou, C.; Chan, W.-L.; Timmermann, B.; Wittler, L.; Vingron, M. et al.; Mundlos, S.; Ibrahim, D. M.: Functional dissection of TADs reveals non-essential and instructive roles in regulating gene expression. bioRxiv (2019)
MPG.PuRe
DOI
pre-print
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