Max Planck Publications of Lastname Lab

The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (3386)

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Key, J.; Almaguer-Mederos, L.-E.; Reddy Kandi, A.; Sen, N.-E.; Gispert, S.; Köpf, G.; Meierhofer, D.; Auburger, G.: ATXN2L primarily interacts with NUFIP2, the absence of ATXN2L results in NUFIP2 depletion, and the ATXN2-polyQ expansion triggers NUFIP2 accumulation. Neurobiology of Disease 209, Article 106903 (2025)
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Traba, S. A.; Bacigalupo, L.; Fradin, D.; Talon, I.; Heidenreich, A. C.; Muraro, D.; Garcia-Bernardo, J.; Gribben , C.; Lugtu, F.; Burgos, J. I. et al.; Romero, A.; Chhatriwala, M.; Pecci, A.; Vallier, L.; Rodríguez-Seguí, S. A.: Endogenous glucocorticoid receptor activation modulates early-stage cell differentiation in pancreatic progenitors of mice and humans. Development, Article dev.204361 (2025)
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Hurtado, A.; Mota-Gómez, I.; Lao, M.; Real, F. M.; Jedamzick, J.; Burgos, M.; Lupiáñez, D. G.; Jiménez, R.; Barrionuevo, F. J.: Complete male-to-female sex reversal in XY mice lacking the miR-17~92 cluster. Nature Communications 15 (1), Article 3809 (2025)
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Chteinberg, E.; Kolarova, J.; Vogt, J.; Macamo, A.; Bormann, F.; Kretzmer, H.; Speel, E. J.; van den Oord, J.; Schneider, C.; Stilgenbauer, S. et al.; Becker, J. C.; Winnepenninckx, V.; Biessen, E.; Zenke, M.; Kurz, A. K.; Siebert, R.; Zur Hausen , A.: The significance of PAX5 in Merkel cell carcinoma. The Journal of Pathology: an Official Journal of the Pathological Society of Great Britain and Ireland 266 (1), pp. 81 - 94 (2025)
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Ortuño-Costela, M. C.; Pinzani, M.; Vallier, L.: Cell therapy for liver disorders: past, present and future. Nature Reviews Gastroenterology & Hepatology 22 (5), pp. 329 - 342 (2025)
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Damiani, F.; Giuliano, M. G.; Cornuti, S.; Putignano, E.; Tognozzi, A.; Suckow, V.; Kalscheuer, V. M.; Pizzorusso, T.; Tognini, P.: Multi-site investigation of gut microbiota in CDKL5 deficiency disorder mouse models: Targeting dysbiosis to improve neurological outcomes. Cell Reports 44 (4), Article 115546 (2025)
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Dordevic, N.; Dierks, C.; Hantikainen, E.; Farztdinov, V.; Amari, F.; Hernandes, V. V.; De Grandi, A.; Domingues, F. S.; Shomroni, O.; Textoris-Taube, K. et al.; Bahr, V.; Schmid, H.; Demuth, I.; Kurth, F.; Mülleder, M.; Pramstaller , P. P.; Rainer, J.; Ralser, M.: Extensive modulation of the circulating blood proteome by hormonal contraceptive use across two population studies. Communications Medicine 5 (1), Article 131 (2025)
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Schwab, R. M.; Gottlieb, S. G.; Reinert, K.: TetRex: a novel algorithm for index-accelerated search of highly conserved motifs. NAR: genomics and bioinformatics 7 (2), Article lqaf039 (2025)
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Villaronga-Luque, A.; Savill, R. G.; López-Anguita, N.; Bolondi, A.; Garai, S.; Gassaloglu, S. I.; Rouatbi, R.; Schmeisser, K.; Poddar, A.; Bauer, L. et al.; Alves, T.; Traikov, S.; Rodenfels, J.; Chavakis, T.; Bulut-Karslioglu, A.; Veenvliet, J. V.: Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in a stem-cell-based embryo model. Cell Stem Cell 32 (5), pp. 759 - 777 (2025)
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Liu, H.; Yin, G.; Leonardi, B. F.; Lan, T.; Ahmed, Y. A.; Berger, H.; Kohlhepp, M. S.; Amiridze, N.; Martagón Calderón, N.; Frau, C. et al.; Vallier, L.; Rezvani, M.; Tacke, F.; Guillot, A.: Reactive cholangiocyte-derived ORM2 drives a pathogenic modulation of the injured biliary niche through macrophage reprogramming. Gut, Article gutjnl-2024-334425 (2025)
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Altendorfer, E.; Mundlos, S.; Mayer, A.: A transcription coupling model for how enhancers communicate with their target genes. Nature Structural & Molecular Biology 32 (4), pp. 598 - 606 (2025)
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Glaser , S.; Fischer, A.; Martínez-Manjón, J. E.; López, C.; Kretzmer, H.; Burkhardt, B.; Hübschmann, D.; Hummel, M.; Klapper, W.; Kolarova, J. et al.; Kreuz, M.; Ott, G. e. a.: Subgrouping germinal center-derived B-cell lymphomas based on machine learning-deduced DNA methylation modules. Leukemia 39 (4), pp. 967 - 971 (2025)
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Berghöfer, J.; Khaveh, N.; Mundlos, S.; Metzger, J.: Multi-tool copy number detection highlights common body size-associated variants in miniature pig breeds from different geographical regions. BMC Genomics 26 (1), Article 285 (2025)
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Messingschlager, M.; Mackowiak, S. D.; Voelker, M. T.; Bieg, M.; Loske, J.; Chua, R. L.; Liebig, J.; Lukassen, S.; Thürmann, L.; Seegebarth, A. et al.; Twardziok, S.; Doncevic, D.; Herrmann, C.; Lorenz, S.; Klages, S.; Steinbeis, F.; Witzenrath, M.; Kurth, F.; Conrad, C.; Sander, L. E.; Ishaque, N.; Eils, R.; Lehmann , I.; Laudi, S.; Trump, S.: DNA methylation changes during acute COVID-19 are associated with long-term transcriptional dysregulation in patients' airway epithelial cells. Embo Molecular Medicine (2025)
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Gottlieb, S. G.; Reinert, K.: SeArcH schemes for Approximate stRing mAtching. NAR: genomics and bioinformatics 7 (1), Article lqaf025 (2025)
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Nowatzky, Y.; Russo, F. F.; Lisec, J.; Kister, A.; Reinert, K.; Muth, T.; Benner, P.: FIORA: Local neighborhood-based prediction of compound mass spectra from single fragmentation events. Nature Communications 16 (1), Article 2298 (2025)
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Abdullaev, E. T.; Haridoss, D. A.; Arndt, P. F.: Reconstruction of Segmental Duplication Rates and Associated Genomic Features by Network Analysis. Genome Biology and Evolution 17 (3), Article evaf011 (2025)
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Wang, M.; Di Pietro-Torres, A.; Feregrino, C.; Luxey, M.; Moreau, C.; Fischer, S.; Fages, A.; Ritz, D.; Tschopp, P.: Distinct gene regulatory dynamics drive skeletogenic cell fate convergence during vertebrate embryogenesis. Nature Communications 16 (1), Article 2187 (2025)
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Brändl, B.; Steiger, M.; Kubelt, C.; Rohrandt, C.; Zhu, Z.; Evers, M.; Wang, G.; Schuldt, B.; Afflerbach, A.-K.; Wong, D. et al.; Lum, A.; Halldorsson, S.; Djirackor, L.; Leske, H.; Magadeeva, S.; Smicius, R.; Quedenau, C.; Schmidt, N. O.; Schüller, U.; Vik-Mo, E. O.; Proescholdt, M.; Riemenschneider, M. J.; Zadeh, G.; Ammerpohl, O.; Yip, S.; Synowitz, M.; van Bömmel, A.; Kretzmer, H.; Müller, F.-J.: Rapid brain tumor classification from sparse epigenomic data. Nature Medicine 31 (3), pp. 840 - 848 (2025)
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Bi, Y.; Lankenau, T. L.; Lienhard, M.; Herwig, R.: IsoTools 2.0: Software for Comprehensive Analysis of Long-read Transcriptome Sequencing Data. Journal of Molecular Biology, Article 169049 (2025)
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