The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Book Chapter (15)

Book Chapter
Sauer, S.: Matrix-assisted Laser Desorption/Ionization Mass Spectrometry: Principles and Applications in Life Sciences. In: Lasers in Chemistry: Probing and Influencing Matter, pp. 593 - 616 (Ed. Lackner, M.). Wiley-VCH, Weinheim (2008)
Book Chapter
Nietfeld, W.: Comparability of microarray experiments from the instrument and the sample site and approaches towards standardization. In: Standardization and quality assurance in fluorescence measurements II: bioanalytical and biomedical applications, pp. 239 - 263 (Ed. Resch-Genger, U.). Springer-Verlag, Berlin; Heidelberg (2008)
Book Chapter
Weese, D.; Schulz, M. H.: Efficient string mining under constraints via the deferred frequency index. In: Advances in Data Mining. Medical Applications, E-Commerce, Marketing, and Theoretical Aspects (Ed. Perner, P.). Springer, Berlin/Heidelberg (2008)
Book Chapter
Koch, I.; Heiner, M.: Petri nets. In: Analysis of Biological Networks, pp. chapter 7:139 - 180 (Ed. Björn H. Junker, F. S.). Wiley Interscience, United Kingdom (2008)
Book Chapter
Coulson, R.; Manke, T.; Palin, K.; Roider, H.; Sand, O.; van Helden, J.; Ukkonen, E.; Vingron, M.; Brazma, A.: From gene expression profiling to gene regulation. In: Modern Genome Annotation, pp. 91 - 102 (Eds. Frishman, D.; Valencia, A.). Springer, Wien (2008)
Book Chapter
Herwig, R.; Schuchhardt, J.; Chavez, L.; Lehrach, H.: Analyse von Biochips: von der Sequenz zum System. In: Grundlagen der Molekularen Medizin, pp. 64 - 100 (Eds. Ganten, D.; Ruckpaul, K.). Springer Verlag, Berlin [et al] (2008)
Book Chapter
Kaiser, P.; Meierhofer, D.; Wang, X.; Huang, L.: Tandem affinity purification combined with mass spectrometry to identify components of protein complexes. In: Methods in molecular biology, Vol. 439, 2nd edition Ed., pp. 309 - 326 (Eds. Starkey, M.; Elaswarapu, R.). Humana Press (2008)
Book Chapter
Klipp, E.; Schaber, J.: Modeling the dynamics of stress activated protein kinases (SAPK) in cellular stress response. In: SAPK - Stress Activated Protein Kinase (Eds. Posas, F.; Nebreda, A. R.). Springer-Verlag, Berlin; Heidelberg (2008)
Book Chapter
Manke, T.; Roider, H. G.; Vingron, M.: A biophysical approach to large-scale protein-DNA binding data. In: Modern Genome Annotation: The Biosapiens Network, pp. 91 - 102 (Eds. Frishman, D.; Valencia, A.). Springer, New York (2008)
Book Chapter
Sievert, V.; Ergin, A.; Büssow, K.: High throughput cloning with restriction enzymes. In: Structural proteomics: high-throughput methods, pp. 163 - 173 (Eds. Kobe, B.; Guss, M.; Huber, T.). Humana Press, New York (2008)
Book Chapter
Ullmann, R.: Array Comparative Genomic Hybridization in Pathology. In: Molecular Pathology of Lung Diseases (Ed. Barrios, R.). Springer, Berlin [et al] (2008)

Proceedings (1)

Proceedings
Comparative study on normalization procedures for cluster analysis of gene expression datasets. (IEEE World Congress on Computational Intelligence, Hong Kong, June 01, 2008 - June 08, 2008. International Joint Conference on Neural Networks, Hong Kong), (2008), Hong Kong (2008)

Conference Paper (5)

Conference Paper
de Souto, M. C.P.; Prudencio, R. B.C.; Soares, R. G.F.; de Araujo, D. S.A.; Costa, I.; Ludermir, T. ..; Schliep, A.: Ranking and selecting clustering algorithms using a meta-learning approach. In: Neural Networks, 2008. IJCNN 2008. (IEEE World Congress on Computational Intelligence). IEEE International Joint Conference on, pp. 3729 - 3735. (IEEE World Congress on Computational Intelligence, Hong Kong, June 01, 2008 - June 08, 2008. (2008)
Conference Paper
Lorena, A. C.; Costa, I. G.; de Souto, M. C. P.: On the Complexity of Gene Expression Classification Data Sets. In: Hybrid Intelligent Systems, 2008. HIS '08. Eighth International Conference on, pp. 825 - 830. Eighth International Conference on Hybrid Intelligent Systems, Barcelona, Spain, September 10, 2008 - September 12, 2008. IEEE (2008)
Conference Paper
Pape, U. J.; Vingron, M.: Statistics for Co-Occurrence of DNA Motifs. 2008 International Workshop on Applied Probability, Université de Technologie de Compiègne, France, July 07, 2008 - July 10, 2008. (2008)
Conference Paper
Adjaye, J. A.; Byskov, A. G.; Cibelli, J. B.; De Maria, R.; Minger, S.; Sampaolesi, M.; Testa, G.; Verfaillie, C.; Zernicka-Goetz, M.; Schöler, H. et al.; Boiani, M.; Crosetto, N.; Redi, C. A.: Pluripotency and differentiation in embryos and stem cells. Pluripotency and differentiation in embryos and stem cells, Pavia, Italy, January 17, 2008 - January 18, 2008. The International Journal of Developmental Biology 52 (7), pp. 801 - 809 (2008)
Conference Paper
Pape, U.; Vingron, M.: Statistical detection of co-operative transcription factors with similarity adjustment. In: Proceedings of the German Conference on Bioinformatics, GCB, pp. 96 - 105 (Ed. Andreas Beyer, M. S.). German Conference on Bioinformatics (GCB), Dresden, September 09, 2008 - September 12, 2008. GI (2008)

Thesis - PhD (13)

Thesis - PhD
Roider, H.: Eukaryotic promoter analysis by means of a biophysical model for DNA transcription factor interactions. Dissertation, Freie Universität Berlin, Berlin (2008)
Thesis - PhD
Véron, N.: Untersuchungen zu den molekularen Grundlagen der nicht-mendelschen Vererbung in der Maus. Dissertation, Freie Universität Berlin, Berlin (2008)
Thesis - PhD
Pape, U. J.: Statistics for transcription factor binding sites. Dissertation, Freie Universität, Berlin (2008)
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